A text format consists of 80 columns. It is the most traditional format.
- See PDB Format for details.
This format is modified from CIF, used to describe crystal structures, to adapt macromolecules.
The mmCIF dictionary is available from following URL:
The format PDBML is based on it.
PDBML is the canonical XML format of PDB entries, originally-introduced in the following reference:
The schema file to define PDBML data description rule is available from following URL:
There are 3 variants of PDBML files
PDBMLplus is also XML formatted data based on PDBML. The additional information such as functional annotation and experimental condition is added by PDBj. It is also available in PDBj Mine. See also PDBMLplus for details.
- See wwPDB/RDF for details.
PDB data are also available in RDF (Resource Description Framework) format. The RDF files are automatically generated from PDBML files using XSLT. The ontology is also defined based on the PDB mmCIF Exchange Dictionary. An RDF file is created for each PDB entry. For example, the RDF data for PDB entry 1GOF is accessible at http://rdf.wwpdb.org/pdb/1GOF.
- http://rdf.wwpdb.org/pdb... a simple (human) interface for wwPDB/RDF data.
- http://rdf.wwpdb.org/schema/pdbx-v40.owl... OWL ontology for the PDB/RDF data.