Pairwise fitting pdb-3izd on emdb-2215 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-2215 by gmfit(PID:2743464).





RANK[4] Corr.Coeff:0.319

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

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b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-2215)

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DOLORS: Versatile Strategy for Internal Labeling and Domain Localization in Electron Microscopy [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.385
0.341
0.333
0.319
0.311
0.311
0.307
0.200
0.177
0.097







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2215.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.613712,0.316227,0.723435 129.568368 center 0,0,0 model #1
move 73.162485,75.329332,33.108198 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!