Pairwise fitting pdb-3izd on emdb-2215 by gmfit










Pairwise fitting of target pdb-3izd on reference emdb-2215 by gmfit(PID:2743464).





RANK[2] Corr.Coeff:0.341

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3izd)

display:



color:



b'MODEL OF THE LARGE SUBUNIT RNA EXPANSION SEGMENT ES27L-OUT BASED ON A ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3izd)]







REFERENCE(emdb-2215)

display:



color:


DOLORS: Versatile Strategy for Internal Labeling and Domain Localization in Electron Microscopy [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.385
0.341
0.333
0.319
0.311
0.311
0.307
0.200
0.177
0.097







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2215.map.gz", and read it.

  2.  Download the Target molecule "3izd"(PDB-format) or
  "3izd"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.339866,-0.552675,0.760948 168.763141 center 0,0,0 model #1
move 190.316597,133.105834,199.351834 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!