Pairwise gmfit
Superimpose two density maps or atomic models by
gmfit
DENSITY MAP
ATOMIC MODEL
Input ID
Upload Map File
Input ID
Upload Pdb File
emdb id
level
pdb_id
chain_id
assembly_id
pdb file upload
TARGET
(be superimposed)
REFERENCE
(fixed)
Examples for similar structural assemblies
Click icons to show superimposed structures !!
emdb vs emdb
pdb vs emdb
pdb vs pdb
TARGET
REFERENCE
TARGET
REFERENCE
TARGET
REFERENCE
emdb:
2155
emdb:
2156
pdbid:
2rec
emdb:
1022
pdbid:
1mmi
pdbid:
1vym
emdb:
1343
emdb:
1067
pdbid:
1aon
emdb:
1046
pdbid:
1ob2
pdbid:
1efg
emdb:
2190
emdb:
2189
pdbid:
3vkg
,chain_id:
A
emdb:
2156
pdbid:
1vvj
,assembly_id:
1
pdbid:
1vy4
,assembly_id:
1
TARGET will be superimposed onto REFERENCE. XYZ-coordinates of REFERENCE is fixed.
This is rigid fitting. Confomations of both TARGET and REFERNECE wll not be changed.
Do gmfit superimposing:
on
off
Comments and questions to :
Last modified :2021/06/02
gmfit
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Protein Data Bank Japan, Osaka University
