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Open data
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Basic information
Entry | Database: PDB / ID: 7odv | ||||||
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Title | Plant peptide hormone receptor complex H1LS1 | ||||||
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![]() | PEPTIDE BINDING PROTEIN / Plant receptor LRR pepide hormone / PEPTIDE BINDING PROTEIN Complex | ||||||
Function / homology | ![]() lateral root morphogenesis / regulation of cell diameter / plant organ development / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Roman, A.O. / Jimenez-Sandoval, P. / Santiago, J. | ||||||
Funding support | ![]()
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![]() | ![]() Title: HSL1 and BAM1/2 impact epidermal cell development by sensing distinct signaling peptides. Authors: Roman, A.O. / Jimenez-Sandoval, P. / Augustin, S. / Broyart, C. / Hothorn, L.A. / Santiago, J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 352.6 KB | Display | ![]() |
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PDB format | ![]() | Display | ![]() | |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 7odkC ![]() 7ogoC ![]() 7ogqC ![]() 7oguC ![]() 7ogzC ![]() 5ixoS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
NCS ensembles :
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Components
-Protein , 2 types, 4 molecules AAADDDBBBEEE
#1: Protein | Mass: 66569.797 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() References: UniProt: Q9SGP2, ![]() #2: Protein | Mass: 21978.709 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() References: UniProt: Q94AG2, ![]() ![]() |
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-Protein/peptide , 1 types, 2 molecules CCCFFF
#3: Protein/peptide | Mass: 1581.793 Da / Num. of mol.: 2 / Fragment: unp RESIDUES 56-69 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() |
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-Sugars , 4 types, 27 molecules ![](data/chem/img/NAG.gif)
#4: Polysaccharide | ![]() Source method: isolated from a genetically manipulated source #5: Polysaccharide | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ![]() Source method: isolated from a genetically manipulated source #6: Polysaccharide | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | ![]() Source method: isolated from a genetically manipulated source #7: Sugar | ChemComp-NAG / ![]() |
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-Non-polymers , 3 types, 369 molecules ![](data/chem/img/MG.gif)
![](data/chem/img/NA.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/NA.gif)
![](data/chem/img/HOH.gif)
#8: Chemical | ChemComp-MG / #9: Chemical | #10: Water | ChemComp-HOH / | ![]() |
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-Details
Has ligand of interest | N |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.34 Å3/Da / Density % sol: 63.16 % |
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Crystal grow![]() | Temperature: 291 K / Method: vapor diffusion, hanging drop / pH: 5 / Details: 0.2 M K/Na tartrate 20% w/v PEG 3350 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N | |||||||||||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | |||||||||||||||||||||
Detector | Type: DECTRIS PILATUS 2M / Detector: PIXEL / Date: Sep 7, 2019 | |||||||||||||||||||||
Radiation | Monochromator: DCCM / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | |||||||||||||||||||||
Radiation wavelength | Wavelength![]() | |||||||||||||||||||||
Reflection | Resolution: 2.31→110.604 Å / Num. obs: 106364 / % possible obs: 100 % / Redundancy: 26 % / CC1/2: 0.998 / Rmerge(I) obs: 0.319 / Rpim(I) all: 0.09 / Rrim(I) all: 0.332 / Net I/σ(I): 8.3 | |||||||||||||||||||||
Reflection shell | Diffraction-ID: 1
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: 5IXO Resolution: 2.31→110.58 Å / Cor.coef. Fo:Fc: 0.932 / Cor.coef. Fo:Fc free: 0.92 / SU B: 11.916 / SU ML: 0.245 / Cross valid method: FREE R-VALUE / ESU R: 0.304 / ESU R Free: 0.23 Details: Hydrogens have been added in their riding positions
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.1 Å / Solvent model: MASK BULK SOLVENT | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 42.702 Å2
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Refinement step | Cycle: LAST / Resolution: 2.31→110.58 Å
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Refine LS restraints |
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