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Open data
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Basic information
Entry | Database: PDB / ID: 6jhw | ||||||
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Title | Structure of anti-CRISPR AcrIIC3 and NmeCas9 HNH | ||||||
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![]() | PROTEIN BINDING/HYDROLASE / Inhibitor / ![]() | ||||||
Function / homology | ![]() maintenance of CRISPR repeat elements / ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Suh, J.Y. / Lee, B.J. / Lee, S.J. / Kim, Y. | ||||||
![]() | ![]() Title: Anti-CRISPR AcrIIC3 discriminates between Cas9 orthologs via targeting the variable surface of the HNH nuclease domain. Authors: Kim, Y. / Lee, S.J. / Yoon, H.J. / Kim, N.K. / Lee, B.J. / Suh, J.Y. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 117 KB | Display | ![]() |
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PDB format | ![]() | 89.9 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 6jhvSC S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 13441.375 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() #2: Protein | Mass: 16576.564 Da / Num. of mol.: 2 / Fragment: HNH domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() References: UniProt: A0A0T7L299, UniProt: A1IQ68*PLUS, ![]() #3: Water | ChemComp-HOH / | ![]() Sequence details | The sequence database match UNP A0A3E2QDI5_NEIME was obsoleted with no supersede. There is no match ...The sequence database match UNP A0A3E2QDI5_NEIME was obsoleted with no supersede. There is no match in UniProt. | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.99 Å3/Da / Density % sol: 38.06 % |
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Crystal grow![]() | Temperature: 298 K / Method: vapor diffusion, sitting drop / pH: 4.5 Details: 0.07 M NaCl, 0.05 M sodium citrate, pH 4.5, 22% (v/v) PEG 400 |
-Data collection
Diffraction | Mean temperature: 298 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Jul 30, 2018 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.04→50 Å / Num. obs: 29510 / % possible obs: 99.6 % / Redundancy: 4.9 % / Rmerge(I) obs: 0.071 / Net I/σ(I): 36.2 |
Reflection shell | Resolution: 2.04→2.08 Å / Rmerge(I) obs: 0.413 / Mean I/σ(I) obs: 3.6 / Num. unique obs: 1526 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: 6JHV Resolution: 2.04→30 Å / Cor.coef. Fo:Fc: 0.946 / Cor.coef. Fo:Fc free: 0.94 / SU B: 5.061 / SU ML: 0.138 / Cross valid method: THROUGHOUT / ESU R: 0.286 / ESU R Free: 0.194 / Stereochemistry target values: MAXIMUM LIKELIHOOD / Details: HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 44.219 Å2
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Refinement step | Cycle: 1 / Resolution: 2.04→30 Å
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Refine LS restraints |
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