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Open data
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Basic information
Entry | Database: PDB / ID: 5uzn | ||||||
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Title | Crystal structure of Glorund qRRM3 domain | ||||||
![]() | AT27789p | ||||||
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Function / homology | ![]() maternal specification of dorsal/ventral axis, oocyte, germ-line encoded / intracellular mRNA localization involved in pattern specification process / Processing of Capped Intron-Containing Pre-mRNA / mRNA Splicing - Major Pathway / pole plasm oskar mRNA localization / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Teramoto, T. / Hall, T.M.T. | ||||||
![]() | ![]() Title: The Drosophila hnRNP F/H Homolog Glorund Uses Two Distinct RNA-Binding Modes to Diversify Target Recognition. Authors: Tamayo, J.V. / Teramoto, T. / Chatterjee, S. / Hall, T.M. / Gavis, E.R. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 32.5 KB | Display | ![]() |
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PDB format | ![]() | 20.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 5uzgC ![]() 5uzmC ![]() 2kg1S C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 10782.001 Da / Num. of mol.: 1 / Fragment: qRRM3 domain residues 475-562 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() ![]() | ||||
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#2: Chemical | ![]() #3: Chemical | ChemComp-SO4 / | ![]() #4: Water | ChemComp-HOH / | ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.18 Å3/Da / Density % sol: 43.52 % |
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Crystal grow![]() | Temperature: 293 K / Method: vapor diffusion, hanging drop Details: 0.5 M ammonium sulfate, 0.1 M Na cacodylate pH 6.4, 1.0 M lithium sulfate |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU SATURN 92 / Detector: CCD / Date: Sep 4, 2012 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.99→50 Å / Num. obs: 6462 / % possible obs: 95.9 % / Redundancy: 12.5 % / Rmerge(I) obs: 0.062 / Net I/σ(I): 32.4 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: 2KG1 Resolution: 1.99→24.809 Å / SU ML: 0.18 / Cross valid method: NONE / σ(F): 0.69 / Phase error: 19.5
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | ||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.99→24.809 Å
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Refine LS restraints |
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LS refinement shell |
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