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Open data
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Basic information
Entry | Database: PDB / ID: 5uzg | ||||||
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Title | Crystal structure of Glorund qRRM1 domain | ||||||
![]() | AT27789p | ||||||
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Function / homology | ![]() maternal specification of dorsal/ventral axis, oocyte, germ-line encoded / intracellular mRNA localization involved in pattern specification process / Processing of Capped Intron-Containing Pre-mRNA / mRNA Splicing - Major Pathway / pole plasm oskar mRNA localization / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Teramoto, T. / Hall, T.M.T. | ||||||
![]() | ![]() Title: The Drosophila hnRNP F/H Homolog Glorund Uses Two Distinct RNA-Binding Modes to Diversify Target Recognition. Authors: Tamayo, J.V. / Teramoto, T. / Chatterjee, S. / Hall, T.M. / Gavis, E.R. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 55.5 KB | Display | ![]() |
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PDB format | ![]() | 38.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 5uzmC ![]() 5uznC ![]() 2kfyS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 11130.540 Da / Num. of mol.: 2 / Fragment: qRRM1 domain residues 45-141 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() ![]() #2: Chemical | ChemComp-GOL / ![]() #3: Chemical | ![]() #4: Water | ChemComp-HOH / | ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.33 Å3/Da / Density % sol: 47.31 % |
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Crystal grow![]() | Temperature: 277 K / Method: vapor diffusion, hanging drop Details: 0.2 M ammonium sulfate, 0.1 M Na acetate pH 4.6, 30% w/v PEGMME 2000 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU SATURN 92 / Detector: CCD / Date: Aug 28, 2012 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 1.54→50 Å / Num. obs: 26983 / % possible obs: 90.9 % / Redundancy: 3.3 % / Rmerge(I) obs: 0.065 / Net I/σ(I): 20.2 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: 2KFY Resolution: 1.541→23.984 Å / SU ML: 0.12 / Cross valid method: FREE R-VALUE / σ(F): 1.35 / Phase error: 20
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.541→23.984 Å
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Refine LS restraints |
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LS refinement shell |
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