登録情報 | データベース: PDB / ID: 2uvu |
---|
タイトル | Crystal structures of mutant Dpo4 DNA polymerases with 8-oxoG containing DNA template-primer constructs |
---|
要素 | - 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*A)-3'
- 5'-D(*TP*CP*AP*CP*8OGP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3'
- DNA POLYMERASE IV
|
---|
キーワード | TRANSFERASE (転移酵素) / DNA-DIRECTED DNA POLYMERASE (DNAポリメラーゼ) / P2 DNA POLYMERASE IV / NUCLEOTIDYLTRANSFERASE / 7 / MAGNESIUM (マグネシウム) / DNA DAMAGE (DNA修復) / DNA REPAIR (DNA修復) / DNA-BINDING / TRANSLESION DNA POLYMERASE / METAL-BINDING / 8-DIHYDRO-8- OXODEOXYGUANOSINE / METAL- BINDING / MUTATOR PROTEIN / DNA REPLICATION (DNA複製) |
---|
機能・相同性 | 機能・相同性情報
SOS response / error-prone translesion synthesis / DNA-templated DNA replication / damaged DNA binding / DNAポリメラーゼ / DNA-directed DNA polymerase activity / magnesium ion binding / 細胞質基質類似検索 - 分子機能 DNA polymerase type-Y, HhH motif / IMS family HHH motif / DNA polymerase IV / DNA polymerase, Y-family, little finger domain / MutS, DNA mismatch repair protein, domain I - #60 / MutS, DNA mismatch repair protein, domain I / DNA polymerase, Y-family, little finger domain / impB/mucB/samB family C-terminal domain / UmuC domain / DNA polymerase, Y-family, little finger domain superfamily ...DNA polymerase type-Y, HhH motif / IMS family HHH motif / DNA polymerase IV / DNA polymerase, Y-family, little finger domain / MutS, DNA mismatch repair protein, domain I - #60 / MutS, DNA mismatch repair protein, domain I / DNA polymerase, Y-family, little finger domain / impB/mucB/samB family C-terminal domain / UmuC domain / DNA polymerase, Y-family, little finger domain superfamily / impB/mucB/samB family / UmuC domain profile. / Reverse transcriptase/Diguanylate cyclase domain / Dna Ligase; domain 1 / 5' to 3' exonuclease, C-terminal subdomain / DNA polymerase; domain 1 / Reverse transcriptase/Diguanylate cyclase domain / Alpha-Beta Plaits / DNA/RNA polymerase superfamily / 2-Layer Sandwich / Orthogonal Bundle / 3-Layer(aba) Sandwich / Mainly Alpha / Alpha Beta類似検索 - ドメイン・相同性 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE / デオキシリボ核酸 / DNA (> 10) / DNA polymerase IV類似検索 - 構成要素 |
---|
生物種 | SULFOLOBUS SOLFATARICUS (古細菌) |
---|
手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.7 Å |
---|
データ登録者 | Irimia, A. / Egli, M. |
---|
引用 | ジャーナル: J.Biol.Chem. / 年: 2007 タイトル: Hydrogen Bonding of 7,8-Dihydro-8-Oxodeoxyguanosine with a Charged Residue in the Little Finger Domain Determines Miscoding Events in Sulfolobus Solfataricus DNA Polymerase Dpo4. 著者: Eoff, R.L. / Irimia, A. / Angel, K.C. / Egli, M. / Guengerich, F.P. |
---|
履歴 | 登録 | 2007年3月14日 | 登録サイト: PDBE / 処理サイト: PDBE |
---|
改定 1.0 | 2007年5月8日 | Provider: repository / タイプ: Initial release |
---|
改定 1.1 | 2011年5月8日 | Group: Version format compliance |
---|
改定 1.2 | 2011年7月13日 | Group: Version format compliance |
---|
改定 1.3 | 2023年12月13日 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Other / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_database_status / pdbx_initial_refinement_model / pdbx_struct_conn_angle / struct_conn / struct_conn_type Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.status_code_sf / _pdbx_struct_conn_angle.ptnr1_auth_asym_id / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr3_auth_asym_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.conn_type_id / _struct_conn.id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_conn_type.id |
---|
|
---|