+データを開く
-基本情報
登録情報 | データベース: PDB / ID: 1gkg | ||||||
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タイトル | Structure Determination and Rational Mutagenesis reveal binding surface of immune adherence receptor, CR1 (CD35) | ||||||
要素 | COMPLEMENT RECEPTOR TYPE 1 | ||||||
キーワード | COMPLEMENT / MODULE (モジュール) / SCR / SUSHI (寿司) | ||||||
機能・相同性 | 機能・相同性情報 complement component C4b receptor activity / immune complex clearance by erythrocytes / complement component C3b receptor activity / positive regulation of serine-type endopeptidase activity / negative regulation of complement activation, alternative pathway / complement component C4b binding / negative regulation of immunoglobulin production / negative regulation of activation of membrane attack complex / negative regulation of complement activation, classical pathway / negative regulation of complement-dependent cytotoxicity ...complement component C4b receptor activity / immune complex clearance by erythrocytes / complement component C3b receptor activity / positive regulation of serine-type endopeptidase activity / negative regulation of complement activation, alternative pathway / complement component C4b binding / negative regulation of immunoglobulin production / negative regulation of activation of membrane attack complex / negative regulation of complement activation, classical pathway / negative regulation of complement-dependent cytotoxicity / negative regulation of complement activation / ATP export / positive regulation of activation of membrane attack complex / plasma membrane organization / T cell mediated immunity / negative regulation of plasma cell differentiation / complement component C3b binding / RUNX1 and FOXP3 control the development of regulatory T lymphocytes (Tregs) / negative regulation of serine-type endopeptidase activity / complement receptor mediated signaling pathway / positive regulation of regulatory T cell differentiation / complement activation, alternative pathway / negative regulation of interleukin-2 production / plasma membrane raft / ficolin-1-rich granule membrane / negative regulation of type II interferon production / negative regulation of T cell proliferation / complement activation, classical pathway / secretory granule membrane / Regulation of Complement cascade / virus receptor activity / 細胞骨格 / Neutrophil degranulation / positive regulation of cell population proliferation / 細胞膜 / extracellular space / extracellular exosome / 細胞膜 類似検索 - 分子機能 | ||||||
生物種 | HOMO SAPIENS (ヒト) | ||||||
手法 | 溶液NMR / MOLECULAR DYNAMICS SIMULATED ANNEALING | ||||||
データ登録者 | Smith, B.O. / Mallin, R.L. / Krych-Goldberg, M. / Wang, X. / Hauhart, R.E. / Bromek, K. / Uhrin, D. / Atkinson, J.P. / Barlow, P.N. | ||||||
引用 | ジャーナル: Cell(Cambridge,Mass.) / 年: 2002 タイトル: Structure of the C3B Binding Site of Cr1 (Cd35), the Immune Adherence Receptor 著者: Smith, B. / Mallin, R. / Krych-Goldberg, M. / Wang, X. / Hauhart, R. / Bromek, K. / Uhrin, D. / Atkinson, J. / Barlow, P. | ||||||
履歴 |
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-構造の表示
構造ビューア | 分子: MolmilJmol/JSmol |
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-ダウンロードとリンク
-ダウンロード
PDBx/mmCIF形式 | 1gkg.cif.gz | 941.1 KB | 表示 | PDBx/mmCIF形式 |
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PDB形式 | pdb1gkg.ent.gz | 788.1 KB | 表示 | PDB形式 |
PDBx/mmJSON形式 | 1gkg.json.gz | ツリー表示 | PDBx/mmJSON形式 | |
その他 | その他のダウンロード |
-検証レポート
アーカイブディレクトリ | https://data.pdbj.org/pub/pdb/validation_reports/gk/1gkg ftp://data.pdbj.org/pub/pdb/validation_reports/gk/1gkg | HTTPS FTP |
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-関連構造データ
-リンク
-集合体
登録構造単位 |
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1 |
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NMR アンサンブル |
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-要素
#1: タンパク質 | 分子量: 14706.579 Da / 分子数: 1 / 断片: MODULES 16 AND 17, OF SITE 2, RESIDUE 1002-1133 / 変異: YES / 由来タイプ: 組換発現 詳細: SECOND TWO MODULES OF SITE 2 IN CR1, A C3B/C4B BINDING SITE 由来: (組換発現) HOMO SAPIENS (ヒト) 解説: RECOMBINANT TECHNOLOGY USING HUMAN GENE (NOT SYNTHETIC) 発現宿主: PICHIA PASTORIS (菌類) / 参照: UniProt: P17927 |
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構成要素の詳細 | CHAIN A ENGINEERED |
-実験情報
-実験
実験 | 手法: 溶液NMR | ||||||||||||||||||||||||||||||||||||||||||||||||
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NMR実験 |
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NMR実験の詳細 | Text: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED PROTEIN |
-試料調製
試料状態 | イオン強度: 20MM NACL / pH: 6.0 / 圧: 1 atm / 温度: 310 K |
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結晶化 | *PLUS 手法: その他 / 詳細: NMR |
-NMR測定
NMRスペクトロメーター |
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-解析
NMR software |
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精密化 | 手法: MOLECULAR DYNAMICS SIMULATED ANNEALING / ソフトェア番号: 1 詳細: REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE | ||||||||||||
NMRアンサンブル | コンフォーマー選択の基準: LOWEST ENERGY / 計算したコンフォーマーの数: 120 / 登録したコンフォーマーの数: 24 |