[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 142 items for (author: e. & richard)

PDB-8vj6:
GluA2 bound to GYKI-52466 and Glutamate, Inhibited State 1
Method: single particle / : Hale WD, Montano Romero A, Huganir RL, Twomey EC

PDB-8vj7:
GluA2 bound to GYKI-52466 and Glutamate, Inhibited State 2
Method: single particle / : Hale WD, Montano Romero A, Huganir RL, Twomey EC

PDB-8qyj:
Human 20S proteasome assembly structure 1
Method: single particle / : Schulman BA, Hanna JW, Harper JW, Adolf F, Du J, Rawson SD, Walsh Jr RM, Goodall EA

PDB-8qyl:
Human 20S proteasome assembly intermediate structure 2
Method: single particle / : Schulman BA, Hanna JW, Harper JW, Adolf F, Du J, Rawson SD, Walsh Jr RM, Goodall EA

PDB-8qym:
Human 20S proteasome assembly intermediate structure 3
Method: single particle / : Schulman BA, Hanna JW, Harper JW, Adolf F, Du J, Rawson SD, Walsh Jr RM, Goodall EA

PDB-8qyn:
Human 20S proteasome assembly intermediate structure 5
Method: single particle / : Schulman BA, Hanna JW, Harper JW, Adolf F, Du J, Rawson SD, Walsh Jr RM, Goodall EA

PDB-8qyo:
Human proteasome 20S core particle
Method: single particle / : Schulman BA, Hanna JW, Harper JW, Adolf F, Du J, Rawson SD, Walsh Jr RM, Goodall EA

PDB-8qys:
Human preholo proteasome 20S core particle
Method: single particle / : Schulman BA, Hanna JW, Harper JW, Adolf F, Du J, Rawson SD, Walsh Jr RM, Goodall EA

PDB-8qz9:
Human 20S proteasome assembly intermediate structure 4
Method: single particle / : Schulman BA, Hanna JW, Harper JW, Adolf F, Du J, Rawson SD, Walsh Jr RM, Goodall EA

PDB-8fhw:
Cryo-EM structure of Cryptococcus neoformans trehalose-6-phosphate synthase homotetramer in complex with uridine diphosphate and glucose-6-phosphate
Method: single particle / : Washington EJ, Brennan RG

PDB-8c54:
Cryo-EM structure of NADH bound SLA dehydrogenase RlGabD from Rhizobium leguminosarum bv. trifolii SRD1565
Method: single particle / : Sharma M, Meek RW, Armstrong Z, Blaza JN, Alhifthi A, Li J, Goddard-Borger ED, Williams SJ, Davies GJ

PDB-8ord:
Cryo-EM map of zebrafish cardiac F-actin
Method: single particle / : Bradshaw M, Squire JM, Morris E, Atkinson G, Richardson B, Lees J, Paul DM

PDB-8bya:
Cryo-EM structure of SKP1-SKP2-CKS1-CDK2-CyclinA-p27KIP1 Complex
Method: single particle / : Rowland RJ, Salamina M, Endicott JA, Noble ME

PDB-8byl:
Cryo-EM structure of SKP1-SKP2-CKS1 from the SCFSKP2 E3 ligase complex
Method: single particle / : Rowland RJ, Salamina M, Endicott JA, Noble MEM

PDB-8bzo:
Cryo-EM structure of CDK2-CyclinA in complex with p27 from the SCFSKP2 E3 ligase Complex
Method: single particle / : Rowland RJ, Salamina M, Endicott JA, Noble ME

PDB-7tn9:
Structure of the Inmazeb cocktail and resistance to escape against Ebola virus
Method: single particle / : Rayaprolu V, Fulton B, Rafique A, Arturo E, Williams D, Hariharan C, Callaway H, Parvate A, Schendel SL, Parekh D, Hui S, Shaffer K, Pascal KE, Wloga E, Giordano S, Copin R, Franklin M, Boytz RM, Donahue C, Davey R, Baum A, Kyratsous CA, Saphire EO

PDB-8cth:
Cryo-EM structure of human METTL1-WDR4-tRNA(Phe) complex
Method: single particle / : Li J, Wang L, Fontana P, Hunkeler M, Roy-Burman SS, Wu H, Fishcer ES, Gregory RI

PDB-8cti:
Cryo-EM structure of human METTL1-WDR4-tRNA(Val) complex
Method: single particle / : Li J, Wang L, Fontana P, Hunkeler M, Roy-Burman SS, Wu H, Fischer ES, Gregory RI

PDB-8ea3:
V-K CAST Transpososome from Scytonema hofmanni, major configuration
Method: single particle / : Rizo AN, Park JU, Tsai AW, Kellogg EH

PDB-8ea4:
V-K CAST Transpososome from Scytonema hofmanni, minor configuration
Method: single particle / : Rizo AR, Park JU, Tsai AW, Kellogg EK

PDB-7svu:
TnsBctd-TnsC-TniQ complex
Method: single particle / : Park J, Tsai AWT, Kellogg EH

PDB-7sqq:
201Phi2-1 Chimallin Cubic (O, 24mer) assembly
Method: single particle / : Laughlin TG, Deep A, Prichard AM, Seitz C, Gu Y, Enustun E, Suslov S, Khanna K, Birkholz EA, Amaro RE, Pogliano J, Corbett KD, Villa E

PDB-7sqr:
201phi2-1 Chimallin localized tetramer reconstruction
Method: single particle / : Laughlin TG, Deep A, Prichard AM, Seitz C, Gu Y, Enustun E, Suslov S, Khanna K, Birkholz EA, Amaro RE, Pogliano J, Corbett KD, Villa E

PDB-7sqs:
201phi2-1 Chimallin C1 localized reconstruction
Method: single particle / : Laughlin TG, Deep A, Prichard AM, Seitz C, Gu Y, Enustun E, Suslov S, Khanna K, Birkholz EA, Amaro RE, Pogliano J, Corbett KD, Villa E

PDB-7sqt:
Goslar chimallin cubic (O, 24mer) assembly
Method: single particle / : Laughlin TG, Deep A, Prichard AM, Seitz C, Gu Y, Enustun E, Suslov S, Khanna K, Birkholz EA, Amaro RE, Pogliano J, Corbett KD, Villa E

PDB-7squ:
Goslar chimallin C4 tetramer localized reconstruction
Method: single particle / : Laughlin TG, Deep A, Prichard AM, Seitz C, Gu Y, Enustun E, Suslov S, Khanna K, Birkholz EA, Amaro RE, Pogliano J, Corbett KD, Villa E

PDB-7sqv:
Goslar chimallin C1 localized reconstruction
Method: single particle / : Laughlin TG, Deep A, Prichard AM, Seitz C, Gu Y, Enustun E, Suslov S, Khanna K, Birkholz EA, Amaro RE, Pogliano J, Corbett KD, Villa E

PDB-7rq6:
Cryo-EM structure of SARS-CoV-2 spike in complex with non-neutralizing NTD-directed CV3-13 Fab isolated from convalescent individual
Method: single particle / : Chen Y, Pozharski E, Tolbert WD, Pazgier M

PDB-7rzw:
CryoEM structure of Arabidopsis thaliana phytochrome B
Method: single particle / : Li H, Burgie ES, Vierstra RD, Li H

PDB-7rw8:
AP2 bound to heparin in the closed conformation
Method: single particle / : Baker RW, Hollopeter G, Partlow EA

PDB-7rw9:
AP2 bound to heparin in the bowl conformation
Method: single particle / : Baker RW, Hollopeter G, Partlow EA

PDB-7rwa:
AP2 bound to heparin and Tgn38 tyrosine cargo peptide
Method: single particle / : Baker RW, Hollopeter G, Partlow EA

PDB-7rwb:
AP2 bound to the APA domain of SGIP in the presence of heparin
Method: single particle / : Baker RW, Hollopeter G, Partlow EA

PDB-7rwc:
AP2 bound to the APA domain of SGIP and heparin; partial signal subtraction and symmetry expansion
Method: single particle / : Baker RW, Hollopeter G, Partlow EA

PDB-7sn4:
Cryo-EM structure of the enterohemorrhagic E. coli O157:H7 flagellar filament
Method: helical / : Kreutzberger MAB, Wang F, Egelman EH

PDB-7sn7:
Cryo-EM structure of the enteropathogenic E. coli O127:H6 flagellar filament
Method: single particle / : Kreutzberger MAB, Chatterjee S, Frankel G, Egelman EH

PDB-7sn9:
Cryo-EM structure of the Sinorhizobium meliloti flagellar filament
Method: helical / : Kreutzberger MAB, Scharf BE, Egelman EH

PDB-7sqd:
Cryo-EM structure of the Achromobacter flagellar filament
Method: helical / : Kreutzberger MA, Wang F, Egelman EH

PDB-7sqj:
Cryo-EM structure of the seam subunits of the enteropathogenic E. coli O127:H6 flagellar filament
Method: single particle / : Kreutzberger MAB, Chatterjee S, Frankel G, Egelman EH

PDB-7s0f:
Isoproterenol bound beta1 adrenergic receptor in complex with heterotrimeric Gi protein
Method: single particle / : Paknejad N, Alegre KO, Su M, Lou JS, Huang J, Jordan KD, Eng ET, Meyerson JR, Hite RK, Huang XY

PDB-7s0g:
Isoproterenol bound beta1 adrenergic receptor in complex with heterotrimeric Gi/s chimera protein
Method: single particle / : Paknejad N, Alegre KO, Su M, Lou JS, Huang J, Jordan KD, Eng ET, Meyerson JR, Hite RK, Huang XY

PDB-7mbp:
Cryo-EM structure of zebrafish TRPM5 in the presence of 1 mM EDTA
Method: single particle / : Ruan Z, Lu W, Du J, Haley E

PDB-7mbq:
Cryo-EM structure of zebrafish TRPM5 in the presence of 5 mM calcium
Method: single particle / : Ruan Z, Lu W, Du J, Haley E

PDB-7mbr:
Cryo-EM structure of zebrafish TRPM5 in the presence of 6 uM calcium (apo state)
Method: single particle / : Ruan Z, Lu W, Du J, Haley E

PDB-7mbs:
Cryo-EM structure of zebrafish TRPM5 in the presence of 6 uM calcium (open state)
Method: single particle / : Ruan Z, Lu W, Du J, Haley E

PDB-7mbt:
Cryo-EM structure of zebrafish TRPM5 E337A mutant in the presence of 5 mM calcium (low calcium occupancy in the transmembrane domain)
Method: single particle / : Ruan Z, Lu W, Du J, Haley E

PDB-7mbu:
Cryo-EM structure of zebrafish TRPM5 E337A mutant in the presence of 5 mM calcium (high calcium occupancy in the transmembrane domain)
Method: single particle / : Ruan Z, Lu W, Du J, Haley E

PDB-7mbv:
Cryo-EM structure of zebrafish TRPM5 in the presence of 5 mM calcium and 0.5 mM NDNA
Method: single particle / : Ruan Z, Lu W, Du J, Haley E

PDB-7bgl:
Salmonella LP ring 26 mer refined in C26 map
Method: single particle / : Johnson S, Furlong E, Lea SM

PDB-7bhq:
In situ assembled Salmonella FlgD hook cap complex
Method: single particle / : Johnson S, Furlong E, Lea SM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more