EntrySummary Database / ID EM DATA BANK (EMDB) / 1641 Title Helical reconstruction of the bacterial L-type flagella filament Map This is a cryo-EM map of L-type flagellin including data up to 4 Angstrom resolution. Sample S. enterica serovar Typhimurium L-type flagella filamentKeywords bacterial flagellumAuthors Maki-Yonekura S , Yonekura K , Namba K Date Deposition : 2009-08-12, Header release : 2010-01-26, Map release : 2011-08-19, Last update : 2012-10-10EMDB Sites EMDB @PDBe (EU) , EMDB @RCSB (USA)Structure Visualization Movies Play Pause Small Medium LargeX OffMovie Page #1 #2 #1 : Surface view with section colored by density value, Surface level: 550, Made by UCSF CHIMERA
#2 : Surface view colored by height, Surface level: 550, Made by UCSF CHIMERA
Supplemental images
Structure viewers Yorodumi , Launch PeppeR (About PeppeR) , Volume viewer (RCSB , PDBe )Related Structure Data Related Entries
Fit : output model of fitting
Similar strucutres (beta)
List of similar structure data about Omokage system
ArticleCitation - Primary Article Nat. Struct. Mol. Biol. , Vol. 17, Issue 4, Page 417-22, Year 2010Title Conformational change of flagellin for polymorphic supercoiling of the flagellar filament. Authors Saori Maki-Yonekura , Koji Yonekura , Keiichi Namba Dynamic NanoMachine Project, International Cooperative Research Project, Japan Science and Technology Agency, Suita, Osaka, Japan.Keywords Bacterial Physiological Phenomena , Flagella (chemistry), Flagellin (chemistry, 12777-81-0 ), Protein ConformationLinks DOI: 10.1038/nsmb.1774 , PubMed: 20228803
MapFile EMD-1641.map ( map file in CCP4 format, 34329 KB )Projections & Slices Size of images: Small Medium LargeAxes Z (Sec.) Y (Row.) X (Col.)X SurfaceX ProjectionsX Slices (1/3)X Slices (1/2)X Slices (2/3)
Images are generated by Spider package .
Density
Contour Level: 550 (by author) , 550 (movie #1): Minimum - Maximum: -948.453 - 2134.49 Average (Standard dev.): 4.55795 (60.6009)
Data Type Image stored as Reals Space Group Number 1 Map Geometry Axis Order : X Y Z Dimensions : 261 131 251 Origin : 0 0 0 Limit : 260 130 250 Spacing : 261 131 251
Unit Cell A = 131 A , B = 261 A , C = 251 A , alpha = 90 degrees , beta = 90 degrees , gamma = 90 degreesPixel Spacing X = 1 A , Y = 1 A , Z = 1 ACCP4 map header info Show mode Image stored as Reals A/pix X/Y/Z 1 1 1 M x/y/z 131 261 251 origin x/y/z 0.000 0.000 0.000 length x/y/z 131.000 261.000 251.000 alpha/beta/gamma 90.000 90.000 90.000 start NX/NY/NZ -17 -17 -200 NX/NY/NZ 123 123 401 MAP C/R/S 1 2 3 start NC/NR/NS 0 0 0 NC/NR/NS 261 131 251 start NC,NX/NR,NY/NS,NZ NC,NX/NR,NY/NS,NZ D min/max/mean -948.453 2134.491 4.558
Annotation Details This is a cryo-EM map of L-type flagellin including data up to 4 Angstrom resolution.