Pairwise fitting pdb-1k4r on pdb-5a1z by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-5a1z by gmfit(PID:656668).





RANK[1] Corr.Coeff:0.632

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-5a1z)

display:



color:


b'CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 2 STRAIN PVP94-07 COMPLEXED' [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.632
0.425
0.421
0.386
0.382
0.376
0.368
0.333
0.250
0.235







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5a1z"(PDB-format) or 
 "5a1z"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.854538,-0.460904,-0.239441 129.246979 center 0,0,0 model #1
move 10.919240,10.146449,16.363884 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!