Pairwise fitting pdb-1k4r on pdb-4uih by gmfit










Pairwise fitting of target pdb-1k4r on reference pdb-4uih by gmfit(PID:4091011).





RANK[1] Corr.Coeff:0.725

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-1k4r)

display:



color:



b'STRUCTURE OF DENGUE VIRUS                                             ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-1k4r)]







REFERENCE(pdb-4uih)

display:



color:


b'CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 2 STRAIN NEW GUINEA-C      ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.725
0.466
0.436
0.379
0.373
0.347
0.333
0.305
0.296
0.265







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4uih"(PDB-format) or 
 "4uih"(mmCIF-format), and read it.

  2.  Download the Target molecule "1k4r"(PDB-format) or
  "1k4r"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.662822,0.635605,0.395820 166.928858 center 0,0,0 model #1
move -86.992684,31.107331,-24.069851 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4uih)]

[Download the target GMM(pdb 1k4r)]

[Download gmfit result file(4091011)]