Pairwise fitting emdb-1390 on pdb-5ogw by gmfit



Pairwise fitting of target emdb-1390 on reference pdb-5ogw by gmfit(PID:4099051).

RANK[1] Corr.Coeff:0.565 [JSmol] [Molmil]
TARGET(emdb-1390)
display:
color:
Averaging tens to hundreds of icosahedral particle images to resolve protein secondary structure elements using a Multi-Path Simulated Annealing optimization algorithm. [Ngauss:20]
[Download superimposed target map (CCP4) (emdb-1390)]
REFERENCE(pdb-5ogw)
display:
color:
b'CRYO-EM STRUCTURE OF JASPLAKINOLIDE-STABILIZED MALARIA PARASITE F- ' [Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.565 0.511 0.495 0.469 0.334 0.324 0.321 0.299 0.279 0.273

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "5ogw"(PDB-format) or "5ogw"(mmCIF-format), and read it.
  2. Download the Target map "emd_1390.map.gz", and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.063439,0.460683,-0.885295 173.085544 center 0,0,0 model #1
    move 144.170581,144.783036,155.203053 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 5ogw)] [Download the target GMM(emdb 1390)] [Download gmfit result file(4099051)]