Pairwise fitting emdb-1022 on pdb-5oyb by gmfit










Pairwise fitting of target emdb-1022 on reference pdb-5oyb by gmfit(PID:12605).





RANK[1] Corr.Coeff:0.692

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(emdb-1022)

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Three-dimensional reconstructions from cryoelectron microscopy images reveal an intimate complex between helicase DnaB and its loading partner DnaC. [Ngauss:20]

[Download superimposed target map (CCP4) (emdb-1022)]







REFERENCE(pdb-5oyb)

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color:


b'STRUCTURE OF CALCIUM-BOUND MTMEM16A CHLORIDE CHANNEL AT 3.75 A        ' [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.692
0.682
0.672
0.669
0.663
0.661
0.644
0.644
0.389
0.384







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5oyb"(PDB-format) or 
 "5oyb"(mmCIF-format), and read it.

  2.  Download the Target map "emd_1022.map.gz", and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.594639,-0.777713,-0.203880 92.970943 center 0,0,0 model #1
move 227.335515,208.187518,27.895438 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 5oyb)]

[Download the target GMM(emdb 1022)]

[Download gmfit result file(12605)]