Pairwise fitting pdb-3dg5 on pdb-5u9g by gmfit










Pairwise fitting of target pdb-3dg5 on reference pdb-5u9g by gmfit(PID:3047172).





RANK[9] Corr.Coeff:0.704

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-3dg5)

display:



color:



b'COORDINATES OF 16S AND 23S RRNAS FITTED INTO THE CRYO-EM MAP OF RF3-  ' [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-3dg5)]







REFERENCE(pdb-5u9g)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.863
0.787
0.762
0.750
0.734
0.717
0.712
0.707
0.704
0.696







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "5u9g"(PDB-format) or 
 "5u9g"(mmCIF-format), and read it.

  2.  Download the Target molecule "3dg5"(PDB-format) or
  "3dg5"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.893547,-0.160054,-0.419472 146.227616 center 0,0,0 model #1
move 193.689360,192.689785,190.237307 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!