+Open data
-Basic information
Entry | Database: PDB / ID: 6afq | ||||||
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Title | Thanatin M21F in presence of DPC | ||||||
Components | Thanatin | ||||||
Keywords | ANTIMICROBIAL PROTEIN / antimicrobial / thanatin | ||||||
Function / homology | defense response to fungus / killing of cells of another organism / defense response to bacterium / innate immune response / extracellular region / Thanatin Function and homology information | ||||||
Biological species | Podisus maculiventris (spined soldier bug) | ||||||
Method | SOLUTION NMR / na | ||||||
Authors | Bhattacharjya, S. / Sinha, S. | ||||||
Funding support | Singapore, 1items
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Citation | Journal: To Be Published Title: Thanatin M21F in presence of DPC Authors: Bhattacharjya, S. / Sinha, S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 6afq.cif.gz | 146.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb6afq.ent.gz | 112.3 KB | Display | PDB format |
PDBx/mmJSON format | 6afq.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 6afq_validation.pdf.gz | 374.1 KB | Display | wwPDB validaton report |
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Full document | 6afq_full_validation.pdf.gz | 470 KB | Display | |
Data in XML | 6afq_validation.xml.gz | 8.5 KB | Display | |
Data in CIF | 6afq_validation.cif.gz | 13.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/af/6afq ftp://data.pdbj.org/pub/pdb/validation_reports/af/6afq | HTTPS FTP |
-Related structure data
Similar structure data | |
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Other databases |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 2457.962 Da / Num. of mol.: 1 / Mutation: M21F / Source method: obtained synthetically / Source: (synth.) Podisus maculiventris (spined soldier bug) / References: UniProt: P55788 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Type: solution / Contents: 0.3 mM 1H ThanatinM21F, 90% H2O/10% D2O / Label: sample_1 / Solvent system: 90% H2O/10% D2O |
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Sample | Conc.: 0.3 mM / Component: ThanatinM21F / Isotopic labeling: 1H |
Sample conditions | Ionic strength: 125 mM / Label: conditions_1 / pH: 5 / Pressure: 1 atm / Temperature: 308 K |
-NMR measurement
NMR spectrometer | Type: Bruker DRX / Manufacturer: Bruker / Model: DRX / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: na / Software ordinal: 3 | ||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |