+Open data
-Basic information
Entry | Database: PDB / ID: 1pp3 | ||||||
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Title | Structure of thaumatin in a hexagonal space group | ||||||
Components | Thaumatin I | ||||||
Keywords | PLANT PROTEIN | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Thaumatococcus daniellii (katemfe) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.6 Å | ||||||
Authors | Charron, C. / Giege, R. / Lorber, B. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 2004 Title: Structure of thaumatin in a hexagonal space group: comparison of packing contacts in four crystal lattices. Authors: Charron, C. / Giege, R. / Lorber, B. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1pp3.cif.gz | 90.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1pp3.ent.gz | 74 KB | Display | PDB format |
PDBx/mmJSON format | 1pp3.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1pp3_validation.pdf.gz | 432.5 KB | Display | wwPDB validaton report |
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Full document | 1pp3_full_validation.pdf.gz | 436.9 KB | Display | |
Data in XML | 1pp3_validation.xml.gz | 20.6 KB | Display | |
Data in CIF | 1pp3_validation.cif.gz | 30.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/pp/1pp3 ftp://data.pdbj.org/pub/pdb/validation_reports/pp/1pp3 | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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2 |
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Unit cell |
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Details | Two biological units in the asymmetric unit |
-Components
#1: Protein | Mass: 22227.059 Da / Num. of mol.: 2 / Source method: isolated from a natural source / Source: (natural) Thaumatococcus daniellii (katemfe) / References: UniProt: P02883 #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 3.25 Å3/Da / Density % sol: 62.15 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 4.5 Details: Ammonium sulfate, glycerol, PEG 400, Lithium sulfate, Magnesium sulfate, Sodium acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: ESRF / Beamline: ID14-2 / Wavelength: 0.933 Å |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Feb 22, 2003 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.933 Å / Relative weight: 1 |
Reflection | Resolution: 1.6→30 Å / Num. all: 74168 / Num. obs: 74168 / % possible obs: 97.9 % / Observed criterion σ(I): 0 / Redundancy: 7.5 % / Rsym value: 0.074 |
Reflection shell | Resolution: 1.6→1.69 Å / Rsym value: 0.215 / % possible all: 99 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT / Resolution: 1.6→30 Å / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Refinement step | Cycle: LAST / Resolution: 1.6→30 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 1.6→1.69 Å |