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Yorodumi- PDB-1hw7: HSP33, HEAT SHOCK PROTEIN WITH REDOX-REGULATED CHAPERONE ACTIVITY -
+Open data
-Basic information
Entry | Database: PDB / ID: 1hw7 | ||||||
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Title | HSP33, HEAT SHOCK PROTEIN WITH REDOX-REGULATED CHAPERONE ACTIVITY | ||||||
Components | HEAT SHOCK PROTEIN HSP33Heat shock response | ||||||
Keywords | CHAPERONE / Hsp33 / dimerization / heat shock protein / oxidative stress | ||||||
Function / homology | Function and homology information maintenance of unfolded protein / protein folding chaperone / unfolded protein binding / response to heat / protein refolding / response to oxidative stress / zinc ion binding / identical protein binding / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Escherichia coli (E. coli) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 2.2 Å | ||||||
Authors | Vijayalakshmi, J. / Mukhergee, M.K. / Graumann, J. / Jakob, U. / Saper, M.A. | ||||||
Citation | Journal: Structure / Year: 2001 Title: The 2.2 A crystal structure of Hsp33: a heat shock protein with redox-regulated chaperone activity. Authors: Vijayalakshmi, J. / Mukhergee, M.K. / Graumann, J. / Jakob, U. / Saper, M.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1hw7.cif.gz | 63.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1hw7.ent.gz | 46.2 KB | Display | PDB format |
PDBx/mmJSON format | 1hw7.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hw/1hw7 ftp://data.pdbj.org/pub/pdb/validation_reports/hw/1hw7 | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Details | The second part of the biological assembly is generated by the two fold axis: -Y, -X, -Z+1/6 applied to chain A |
-Components
#1: Protein | Mass: 28442.018 Da / Num. of mol.: 1 / Fragment: N-TERMINAL DOMAIN Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / Gene: HSLO / Plasmid: PET11A(PSS1) / Species (production host): Escherichia coli / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21(DE3) / References: UniProt: P0A6Y5 | ||||||
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#2: Chemical | ChemComp-SO4 / #3: Chemical | ChemComp-ZN / | #4: Chemical | ChemComp-MES / | #5: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 3.12 Å3/Da / Density % sol: 60.6 % | ||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 6.8 Details: Drops contained 2 microlitres of protein solution (10mg/ml in 20mM KCL, 40mM HEPES pH 7.5) supplemented with 2mM DTT and 0.3 mM ZnCl2 and 2 microlitres of precipitant (1.5 M ammonium ...Details: Drops contained 2 microlitres of protein solution (10mg/ml in 20mM KCL, 40mM HEPES pH 7.5) supplemented with 2mM DTT and 0.3 mM ZnCl2 and 2 microlitres of precipitant (1.5 M ammonium sulfate, 10% dioxane, 0.1 M MES pH 6.8) and were equilibrated against 1ml of the same precipitant., VAPOR DIFFUSION, HANGING DROP, temperature 298K | ||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 22 ℃ / pH: 7.5 | ||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: SYNCHROTRON / Site: APS / Beamline: 14-BM-C / Wavelength: 1 Å |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: Mar 31, 2000 / Details: Bent conical Si-mirror (Rh coating) |
Radiation | Monochromator: Bent cylindrical Ge(111) monochromator / Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.2→30 Å / Num. all: 18629 / Num. obs: 18629 / % possible obs: 99.7 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 23.9 % / Biso Wilson estimate: 32.2 Å2 / Rmerge(I) obs: 0.048 / Net I/σ(I): 45.7 |
Reflection shell | Resolution: 2.2→2.28 Å / Redundancy: 6.9 % / Rmerge(I) obs: 0.323 / Mean I/σ(I) obs: 14 / Num. unique all: 1968 / % possible all: 99.9 |
Reflection | *PLUS Num. measured all: 444763 |
Reflection shell | *PLUS % possible obs: 99.9 % |
-Processing
Software |
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Refinement | Method to determine structure: MAD Starting model: Structure phased by three-wavelength MAD experiment of AUCN-derived crystals and refined to 2.4 A. Resolution: 2.2→30 Å / Cross valid method: Free R / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh & Huber Details: Used Bijovoet pairs of reflections, anomalous corrections to scattering factors for Zn at 1A and bulk solvent corrections
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Solvent computation | Bsol: 77.4 Å2 / ksol: 0.38 e/Å3 | ||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 39.9 Å2 | ||||||||||||||||||||||||||||||||||||||||
Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.2→30 Å
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Refine LS restraints |
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Software | *PLUS Name: CNS / Version: 0.9 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 2.2 Å / Lowest resolution: 30 Å / σ(F): 0 / % reflection Rfree: 5 % / Rfactor obs: 0.229 | ||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 39.9 Å2 | ||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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