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Yorodumi- PDB-1erb: THE INTERACTION OF N-ETHYL RETINAMIDE WITH PLASMA RETINOL-BINDING... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1erb | ||||||
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Title | THE INTERACTION OF N-ETHYL RETINAMIDE WITH PLASMA RETINOL-BINDING PROTEIN (RBP) AND THE CRYSTAL STRUCTURE OF THE RETINOID-RBP COMPLEX AT 1.9 ANGSTROMS RESOLUTION | ||||||
Components | RETINOL BINDING PROTEINRetinol-binding protein | ||||||
Keywords | RETINOL TRANSPORT | ||||||
Function / homology | Function and homology information retinol transport / retinol transmembrane transporter activity / retinal binding / retinol binding / extracellular space Similarity search - Function | ||||||
Biological species | Bos taurus (cattle) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.9 Å | ||||||
Authors | Zanotti, G. / Berni, R. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 1993 Title: The interaction of N-ethyl retinamide with plasma retinol-binding protein (RBP) and the crystal structure of the retinoid-RBP complex at 1.9-A resolution. Authors: Zanotti, G. / Malpeli, G. / Berni, R. #1: Journal: J.Mol.Biol. / Year: 1993 Title: Crystal Structure of the Trigonal Form of Human Plasma Retinol-Binding Protein at 2.5 Angstroms Resolution Authors: Zanotti, G. / Ottonello, S. / Berni, R. / Monaco, H.L. #2: Journal: J.Biol.Chem. / Year: 1993 Title: Crystal Structure of Liganded and Unliganded Forms of Bovine Plasma Retinol-Binding Protein Authors: Zanotti, G. / Berni, R. / Monaco, H.L. #3: Journal: Eur.J.Biochem. / Year: 1990 Title: The Bovine Plasma Retinol-Binding Protein. Amino Acid Sequence, Interaction with Transthyretin, Crystallization and Preliminary X-Ray Data Authors: Berni, R. / Stoppini, M. / Zapponi, C.M. / Meloni, M.L. / Monaco, H.L. / Zanotti, G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1erb.cif.gz | 47.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1erb.ent.gz | 36.8 KB | Display | PDB format |
PDBx/mmJSON format | 1erb.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/er/1erb ftp://data.pdbj.org/pub/pdb/validation_reports/er/1erb | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: CYS 174 - ASP 175 OMEGA = 0.02 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION |
-Components
#1: Protein | Mass: 21095.654 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Bos taurus (cattle) / References: UniProt: P18902 |
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#2: Chemical | ChemComp-ETR / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.06 Å3/Da / Density % sol: 40.21 % | |||||||||||||||||||||||||
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Crystal grow | *PLUS Method: microdialysis / Details: referred to 1hbq / PH range low: 5.3 / PH range high: 5 | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.9 Å / Lowest resolution: 9999 Å / Num. obs: 11262 / % possible obs: 79 % / Observed criterion σ(I): 1 / Num. measured all: 37176 / Rmerge(I) obs: 0.038 |
Reflection shell | *PLUS Highest resolution: 1.9 Å / Lowest resolution: 2 Å / % possible obs: 59 % / Num. unique obs: 1645 |
-Processing
Software | Name: TNT / Classification: refinement | ||||||||||||||||||||||||||||||
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Refinement | Rfactor obs: 0.172 / Highest resolution: 1.9 Å | ||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.9 Å
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Refine LS restraints |
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Software | *PLUS Name: TNT / Classification: refinement | ||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 1.9 Å / Lowest resolution: 9 Å / Num. reflection obs: 11261 / σ(I): 1 / Rfactor obs: 0.172 | ||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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