登録情報 | データベース: PDB / ID: 5tbn |
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タイトル | Solution NMR structure of PHF20 PHD domain in complex with a histone H3K4me2 peptide |
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要素 | - Histone H3.1ヒストンH3
- PHD finger protein 20
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キーワード | TRANSCRIPTION / STRUCTURAL PROTEIN / PHD finger / Methylated lysine / TRANSCRIPTION - STRUCTURAL PROTEIN complex |
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機能・相同性 | 機能・相同性情報
NSL complex / : / Regulation of TP53 Activity through Association with Co-factors / Formation of WDR5-containing histone-modifying complexes / MLL1 complex / histone acetyltransferase complex / Chromatin modifying enzymes / epigenetic regulation of gene expression / telomere organization / RNA Polymerase I Promoter Opening ...NSL complex / : / Regulation of TP53 Activity through Association with Co-factors / Formation of WDR5-containing histone-modifying complexes / MLL1 complex / histone acetyltransferase complex / Chromatin modifying enzymes / epigenetic regulation of gene expression / telomere organization / RNA Polymerase I Promoter Opening / Interleukin-7 signaling / Assembly of the ORC complex at the origin of replication / DNAメチル化 / Condensation of Prophase Chromosomes / ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression / Chromatin modifications during the maternal to zygotic transition (MZT) / SIRT1 negatively regulates rRNA expression / HCMV Late Events / PRC2 methylates histones and DNA / Defective pyroptosis / HDACs deacetylate histones / RNA Polymerase I Promoter Escape / Stabilization of p53 / Transcriptional regulation by small RNAs / Formation of the beta-catenin:TCF transactivating complex / RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function / Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3 / NoRC negatively regulates rRNA expression / B-WICH complex positively regulates rRNA expression / HDMs demethylate histones / PKMTs methylate histone lysines / RMTs methylate histone arginines / 遺伝的組換え / Pre-NOTCH Transcription and Translation / nucleosome assembly / Activation of anterior HOX genes in hindbrain development during early embryogenesis / HCMV Early Events / Transcriptional regulation of granulopoiesis / structural constituent of chromatin / ヌクレオソーム / Regulation of TP53 Degradation / RUNX1 regulates transcription of genes involved in differentiation of HSCs / 遺伝子発現 / chromatin organization / Factors involved in megakaryocyte development and platelet production / HATs acetylate histones / Senescence-Associated Secretory Phenotype (SASP) / Oxidative Stress Induced Senescence / 核膜 / Estrogen-dependent gene expression / cadherin binding / protein heterodimerization activity / Amyloid fiber formation / regulation of transcription by RNA polymerase II / positive regulation of DNA-templated transcription / protein-containing complex / DNA binding / extracellular exosome / extracellular region / 核質 / 生体膜 / metal ion binding / 細胞核 / 細胞質基質類似検索 - 分子機能 PHD finger protein 20, AT hook / PHD finger protein 20, AT-hook / DNA repair protein Crb2, Tudor domain / DNA repair protein Crb2 Tudor domain / PHD finger protein 20-like / PhD finger domain / Tudor domain / Tudor domain / Zinc/RING finger domain, C3HC4 (zinc finger) / Herpes Virus-1 ...PHD finger protein 20, AT hook / PHD finger protein 20, AT-hook / DNA repair protein Crb2, Tudor domain / DNA repair protein Crb2 Tudor domain / PHD finger protein 20-like / PhD finger domain / Tudor domain / Tudor domain / Zinc/RING finger domain, C3HC4 (zinc finger) / Herpes Virus-1 / Zinc finger C2H2 type domain profile. / Zinc finger, PHD-type, conserved site / Zinc finger C2H2 type domain signature. / Zinc finger PHD-type signature. / Zinc finger C2H2-type / Histone H3 signature 1. / Zinc finger, PHD-type / PHD zinc finger / Histone H3 signature 2. / ヒストンH3 / Histone H3/CENP-A / Histone H2A/H2B/H3 / Core histone H2A/H2B/H3/H4 / Zinc finger, FYVE/PHD-type / Histone-fold / Zinc finger, RING/FYVE/PHD-type / 2-Layer Sandwich / Alpha Beta類似検索 - ドメイン・相同性 |
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生物種 | Homo sapiens (ヒト) |
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手法 | 溶液NMR / simulated annealing |
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データ登録者 | Cui, G. / Botuyan, M.V. / Mer, G. |
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資金援助 | 米国, 1件 組織 | 認可番号 | 国 |
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National Institutes of Health/National Cancer Institute (NIH/NCI) | CA132878 | 米国 |
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引用 | ジャーナル: Cell Rep / 年: 2016 タイトル: PHF20 Readers Link Methylation of Histone H3K4 and p53 with H4K16 Acetylation. 著者: Klein, B.J. / Wang, X. / Cui, G. / Yuan, C. / Botuyan, M.V. / Lin, K. / Lu, Y. / Wang, X. / Zhao, Y. / Bruns, C.J. / Mer, G. / Shi, X. / Kutateladze, T.G. |
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履歴 | 登録 | 2016年9月12日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2016年10月12日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2016年11月2日 | Group: Database references |
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改定 1.2 | 2017年9月20日 | Group: Author supporting evidence / Structure summary / カテゴリ: entity / pdbx_audit_support Item: _entity.pdbx_number_of_molecules / _pdbx_audit_support.funding_organization |
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改定 1.3 | 2019年12月4日 | Group: Author supporting evidence / Data collection カテゴリ: pdbx_audit_support / pdbx_nmr_software / pdbx_nmr_spectrometer Item: _pdbx_audit_support.funding_organization / _pdbx_nmr_software.name / _pdbx_nmr_spectrometer.model |
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