登録情報 | データベース: PDB / ID: 4ga6 |
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タイトル | Crystal structure of AMP phosphorylase C-terminal deletion mutant in complex with substrates |
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要素 | Putative thymidine phosphorylase |
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キーワード | TRANSFERASE (転移酵素) / phosphorolysis |
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機能・相同性 | 機能・相同性情報
AMP phosphorylase / pyrimidine deoxyribonucleoside metabolic process / pentosyltransferase activity / pyrimidine nucleobase metabolic process / 1,4-alpha-oligoglucan phosphorylase activity / AMP catabolic process / AMP binding / phosphate ion binding / 細胞質基質類似検索 - 分子機能 Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 - #50 / Thymidine phosphorylase/AMP phosphorylase / AMP phosphorylase / Pyrimidine nucleoside phosphorylase-like, C-terminal domain / Thymidine/pyrimidine-nucleoside phosphorylase / Pyrimidine nucleoside phosphorylase, C-terminal / Pyrimidine-nucleoside phosphorylase, conserved site / Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily / Pyrimidine nucleoside phosphorylase C-terminal domain / Thymidine and pyrimidine-nucleoside phosphorylases signature. ...Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 - #50 / Thymidine phosphorylase/AMP phosphorylase / AMP phosphorylase / Pyrimidine nucleoside phosphorylase-like, C-terminal domain / Thymidine/pyrimidine-nucleoside phosphorylase / Pyrimidine nucleoside phosphorylase, C-terminal / Pyrimidine-nucleoside phosphorylase, conserved site / Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily / Pyrimidine nucleoside phosphorylase C-terminal domain / Thymidine and pyrimidine-nucleoside phosphorylases signature. / Pyrimidine nucleoside phosphorylase C-terminal domain / Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 / Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain / Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 / Glycosyl transferase family 3, N-terminal domain / Glycosyl transferase family 3, N-terminal domain superfamily / Glycosyl transferase family, helical bundle domain / Glycosyl transferase, family 3 / Glycosyl transferase family, a/b domain / Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily / Barwin-like endoglucanases - #20 / Barwin-like endoglucanases / Aldehyde Oxidoreductase; domain 3 / Alpha-Beta Complex / Up-down Bundle / Βバレル / 3-Layer(aba) Sandwich / Mainly Beta / Mainly Alpha / Alpha Beta類似検索 - ドメイン・相同性 |
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生物種 | Thermococcus kodakarensis (古細菌) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2.21 Å |
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データ登録者 | Nishitani, Y. / Aono, R. / Nakamura, A. / Sato, T. / Atomi, H. / Imanaka, T. / Miki, K. |
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引用 | ジャーナル: J.Mol.Biol. / 年: 2013 タイトル: Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization 著者: Nishitani, Y. / Aono, R. / Nakamura, A. / Sato, T. / Atomi, H. / Imanaka, T. / Miki, K. |
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履歴 | 登録 | 2012年7月25日 | 登録サイト: RCSB / 処理サイト: PDBJ |
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改定 1.0 | 2013年5月15日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2014年3月12日 | Group: Database references |
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改定 1.2 | 2023年11月8日 | Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description カテゴリ: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model / struct_ref_seq_dif / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_ref_seq_dif.details / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id |
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