- PDB-2mv8: Solution structure of Ovis Aries PrP with mutation delta190-197 -
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基本情報
登録情報
データベース: PDB / ID: 2mv8
タイトル
Solution structure of Ovis Aries PrP with mutation delta190-197
要素
Major prion protein
キーワード
IMMUNE SYSTEM (免疫系) / prion (プリオン) / scrapie (スクレイピー) / major prion protein / cellular form / transmissible spongiform encephalopathy (伝達性海綿状脳症)
機能・相同性
機能・相同性情報
side of membrane / tubulin binding / protein homooligomerization / microtubule binding / copper ion binding / ゴルジ体 / identical protein binding / 細胞膜 類似検索 - 分子機能
Prion/Doppel protein, beta-ribbon domain / Major Prion Protein / Prion protein signature 1. / Prion protein signature 2. / Major prion protein N-terminal domain / Major prion protein bPrPp - N terminal / Prion protein / Major prion protein / Prion/Doppel protein, beta-ribbon domain / Prion/Doppel beta-ribbon domain superfamily ...Prion/Doppel protein, beta-ribbon domain / Major Prion Protein / Prion protein signature 1. / Prion protein signature 2. / Major prion protein N-terminal domain / Major prion protein bPrPp - N terminal / Prion protein / Major prion protein / Prion/Doppel protein, beta-ribbon domain / Prion/Doppel beta-ribbon domain superfamily / Prion/Doppel alpha-helical domain / Orthogonal Bundle / Mainly Alpha 類似検索 - ドメイン・相同性
Major prion protein / Major prion protein 類似検索 - 構成要素
0.35 mM [U-99% 13C; U-99% 15N] PrPdelta190, 10.00 mM Sodium acetate, 90% H2O/10% D2O
90% H2O/10% D2O
2
0.45 mM [U-99% 15N] PrPdelta190, 10.00 mM Sodium acetate, 90% H2O/10% D2O
90% H2O/10% D2O
3
0.35 mM [U-99% 13C; U-99% 15N] PrPdelta190, 10.00 mM Sodium acetate, 100% D2O
100% D2O
試料
濃度 (mg/ml)
構成要素
Isotopic labeling
Solution-ID
0.35mM
PrPdelta190-197-1
[U-99% 13C; U-99% 15N]
1
10.00mM
Sodium acetate-2
1
0.45mM
PrPdelta190-197-3
[U-99% 15N]
2
10.00mM
Sodium acetate-4
2
0.35mM
PrPdelta190-197-5
[U-99% 13C; U-99% 15N]
3
10.00mM
Sodium acetate-6
3
試料状態
イオン強度: 0 / pH: 5.30 / 圧: 1.00 atm / 温度: 298.00 K
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NMR測定
NMRスペクトロメーター
タイプ
製造業者
モデル
磁場強度 (MHz)
Spectrometer-ID
Bruker Avance
Bruker
AVANCE
800
1
Bruker Avance
Bruker
AVANCE
950
2
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解析
NMR software
名称
バージョン
開発者
分類
CYANA
3
PeterGuntert
structurecalculation
CcpNmr Analysis
2.2
CCPN
assignment
TALOS+
1
YangShen
dihedralangles
TopSpin
3.1
Bruker
collection
TopSpin
3.1
Bruker
解析
CYANA
PeterGuntert
精密化
精密化
手法: torsion angle dynamics / ソフトェア番号: 1
NMR constraints
NOE constraints total: 1938 / NOE intraresidue total count: 536 / NOE long range total count: 465 / NOE medium range total count: 383 / NOE sequential total count: 553 / Protein phi angle constraints total count: 77 / Protein psi angle constraints total count: 79
代表構造
選択基準: closest to the average
NMRアンサンブル
コンフォーマー選択の基準: target function / 計算したコンフォーマーの数: 100 / 登録したコンフォーマーの数: 20