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- SASDFK9: Poly-uridine rU30 in 100 mM NaCl (Poly-uridine, rU30) -

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Basic information

Entry
Database: SASBDB / ID: SASDFK9
SamplePoly-uridine rU30 in 100 mM NaCl
  • Poly-uridine (RNA), rU30
Contact author
  • Alex Plumridge (Cornell University, Ithaca, NY, United States)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #3438
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3439
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3440
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3441
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3442
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3443
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3444
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3445
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3446
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3447
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3448
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3449
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3450
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3451
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3452
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3453
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3454
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3455
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3456
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)
Model #3457
Type: atomic / Chi-square value: 0.946729 / P-value: 0.640182
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Poly-uridine rU30 in 100 mM NaCl / Specimen concentration: 0.40-1.20
BufferName: 1 mM Na-MOPS, 100 mM NaCl, 20 µM EDTA / pH: 7
Entity #1770Name: rU30 / Type: RNA / Description: Poly-uridine / Formula weight: 9.203 / Num. of mol.: 1
Sequence:
UUUUUUUUUU UUUUUUUUUU UUUUUUUUUU

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Experimental information

BeamInstrument name: Cornell High Energy Synchrotron Source (CHESS) G1
City: Ithaca, NY / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.11 Å / Dist. spec. to detc.: 2.04 mm
DetectorName: Finger Lakes CCD / Type: CCD
Scan
Title: Poly-uridine rU30 in 100 mM NaCl / Measurement date: Oct 25, 2015 / Storage temperature: 4 °C / Cell temperature: 25 °C / Exposure time: 10 sec. / Number of frames: 30 / Unit: 1/A /
MinMax
Q0.01 0.27
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 199 /
MinMax
Q0.012 0.21
P(R) point1 199
R0 126.5
Result
Type of curve: extrapolated /
ExperimentalPorod
MW17 kDa-
Volume-22 nm3

P(R)GuinierGuinier error
Forward scattering, I030.66 29.86 0.39
Radius of gyration, Rg2.96 nm2.68 nm0.06

MinMax
D-12.65
Guinier point3 39

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