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- SASDFJ9: Poly-uridine rU30 in 20 mM NaCl (Poly-uridine, rU30) -

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Basic information

Entry
Database: SASBDB / ID: SASDFJ9
SamplePoly-uridine rU30 in 20 mM NaCl
  • Poly-uridine (RNA), rU30
Contact author
  • Alex Plumridge (Cornell University, Ithaca, NY, United States)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #3417
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3418
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3419
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3421
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3422
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3423
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3424
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
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Model #3425
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3426
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3427
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3428
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
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Model #3429
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
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Model #3430
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
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Model #3431
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3432
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3433
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3434
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3435
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3436
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)
Model #3437
Type: atomic / Chi-square value: 0.964324 / P-value: 0.394932
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Poly-uridine rU30 in 20 mM NaCl / Specimen concentration: 0.40-1.20
BufferName: 1 mM Na-MOPS, 20 mM NaCl, 20 µM EDTA / pH: 7
Entity #1770Name: rU30 / Type: RNA / Description: Poly-uridine / Formula weight: 9.203 / Num. of mol.: 1
Sequence:
UUUUUUUUUU UUUUUUUUUU UUUUUUUUUU

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Experimental information

BeamInstrument name: Cornell High Energy Synchrotron Source (CHESS) G1
City: Ithaca, NY / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.11 Å / Dist. spec. to detc.: 2.04 mm
DetectorName: Finger Lakes CCD / Type: CCD
Scan
Title: Poly-uridine rU30 in 20 mM NaCl / Measurement date: Oct 25, 2015 / Storage temperature: 4 °C / Cell temperature: 25 °C / Exposure time: 10 sec. / Number of frames: 30 / Unit: 1/A /
MinMax
Q0.01 0.27
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 167 /
MinMax
Q0.019 0.185
P(R) point1 167
R0 120
Result
Type of curve: extrapolated /
ExperimentalPorod
MW14 kDa-
Volume-29 nm3

P(R)GuinierGuinier error
Forward scattering, I029.35 29.5 0.48
Radius of gyration, Rg3.11 nm3.03 nm0.08

MinMax
D-12
Guinier point6 34

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