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- SASDFL4: C-type lectins CTL4/CTLMA2, 3.1 mg/ml (AGAP005335-PA, CTL4 + AGAP... -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDFL4
SampleC-type lectins CTL4/CTLMA2, 3.1 mg/ml
  • AGAP005335-PA (protein), CTL4, Anopheles gambiae
  • AGAP005334-PA (protein), CTLMA2, Anopheles gambiae
Function / homology
Function and homology information


negative regulation of melanization defense response / carbohydrate binding / external side of plasma membrane
Similarity search - Function
: / C-type lectin, conserved site / C-type lectin domain signature. / Lectin C-type domain / C-type lectin domain profile. / C-type lectin-like / C-type lectin (CTL) or carbohydrate-recognition domain (CRD) / C-type lectin-like/link domain superfamily / C-type lectin fold
Similarity search - Domain/homology
AGAP005335-PA / AGAP005334-PA
Similarity search - Component
Biological speciesAnopheles gambiae (African malaria mosquito)
Contact author
  • Richard Baxter (Temple University)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #2841
Type: atomic / Chi-square value: 1.07275877370135 / P-value: 0.481779
Search similar-shape structures of this assembly by Omokage search (details)
Model #2842
Type: atomic / Chi-square value: 1.07275877370135 / P-value: 0.481779
Search similar-shape structures of this assembly by Omokage search (details)
Model #2843
Type: atomic / Chi-square value: 1.07275877370135 / P-value: 0.481779
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: C-type lectins CTL4/CTLMA2, 3.1 mg/ml / Specimen concentration: 3.1 mg/ml / Entity id: 1505 / 1506
BufferName: 500 mM NaCl, 20 mM CHES, 0.5 mM CaCl2, 1% glycerol / pH: 9
Comment: necessary to prevent formation of higher order oligomers
Entity #1505Name: CTL4 / Type: protein / Description: AGAP005335-PA / Formula weight: 18.095 / Num. of mol.: 1 / Source: Anopheles gambiae / References: UniProt: Q7Q7F7
Sequence:
YRATTAREMI TQNLCVCPCG NPRGGKLYTT PNLRLNWFDA VSYCSSIGMS IATIKDTNER QLLQLHLDGD RRLTRSQKRS KIPYWIGANS LIAGQGLRWG LTDQEVKESA EWADGIAPAN NRVEPFCVYI QGSTMSWVAT SCDDEPRQFI CEYHHHHHH
Entity #1506Name: CTLMA2 / Type: protein / Description: AGAP005334-PA / Formula weight: 17.874 / Num. of mol.: 1 / Source: Anopheles gambiae / References: UniProt: Q7Q7F8
Sequence:
DLSVPKTVDD ILQQNPCLCP CKPFEEKEYF IPISRTSDWF GAVAYCHSVG MELAEVLNED EARAMGEVIA EEESDSDDEF YWIGANDLGV QGTYRWALAG RPVLYSQWAA GEPNHARGEN GQQPAERCVA VAMDKYEWND FQCTQQKPFI CQQFRKH

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Experimental information

BeamInstrument name: Thomas Jefferson University Rigaku BioSAXS-2000
City: Philadelphia, PA / 国: USA / Type of source: X-ray in house / Wavelength: 0.154187 Å / Dist. spec. to detc.: 0.481 mm
DetectorName: Pilatus 100K / Pixsize x: 172 mm
Scan
Title: C-type lectins CTL4/CTLMA2, 3.1 mg/ml / Measurement date: Aug 30, 2018 / Storage temperature: 20 °C / Cell temperature: 20 °C / Exposure time: 300 sec. / Number of frames: 6 / Unit: 1/A /
MinMax
Q0.0066 0.694
Distance distribution function P(R)
Sofotware P(R): GNOM 4.6 / Number of points: 263 /
MinMax
Q0.03097 0.4068
P(R) point17 279
R0 80
Result
Type of curve: single_conc /
ExperimentalPorod
MW39 kDa36 kDa
Volume-58 nm3

P(R)GuinierGuinier error
Forward scattering, I00.6474 0.65 0.01
Radius of gyration, Rg2.54 nm2.49 nm0.03

MinMax
D-8
Guinier point9 32

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