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- SASDFC5: Enhanced disease susceptibility 1 (EDS1) (Enhanced disease suscep... -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDFC5
SampleEnhanced disease susceptibility 1 (EDS1)
  • Enhanced disease susceptibility (protein), EDS1, Arabidopsis thaliana
Function / homology
Function and homology information


aerenchyma formation / EDS1 disease-resistance complex / leaf abscission / systemic acquired resistance, salicylic acid mediated signaling pathway / systemic acquired resistance / plant-type hypersensitive response / response to singlet oxygen / lipase activity / regulation of hydrogen peroxide metabolic process / chloroplast ...aerenchyma formation / EDS1 disease-resistance complex / leaf abscission / systemic acquired resistance, salicylic acid mediated signaling pathway / systemic acquired resistance / plant-type hypersensitive response / response to singlet oxygen / lipase activity / regulation of hydrogen peroxide metabolic process / chloroplast / lipid metabolic process / defense response to Gram-negative bacterium / response to hypoxia / endoplasmic reticulum / protein homodimerization activity / nucleus / cytoplasm / cytosol
Similarity search - Function
EDS1, EP domain / EDS1-like / Enhanced disease susceptibility 1 protein EP domain / Fungal lipase-like domain / Lipase (class 3) / Lipases, serine active site. / Alpha/Beta hydrolase fold
Similarity search - Domain/homology
Biological speciesArabidopsis thaliana (thale cress)
Contact author
  • Martin Voss (University of cologne)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #2806
Type: dummy / Radius of dummy atoms: 2.60 A / Chi-square value: 0.824 / P-value: 0.059642
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Enhanced disease susceptibility 1 (EDS1) / Specimen concentration: 5 mg/ml
BufferName: 50 mM NaCl, 50 mM HEPES, 1% glyercol, 1 mM DTT / pH: 8
Entity #1480Name: EDS1 / Type: protein / Description: Enhanced disease susceptibility / Formula weight: 71.689 / Num. of mol.: 1 / Source: Arabidopsis thaliana / References: UniProt: Q9SU72
Sequence: MAFEALTGIN GDLITRSWSA SKQAYLTERY HKEEAGAVVI FAFQPSFSEK DFFDPDNKSS FGEIKLNRVQ FPCMRKIGKG DVATVNEAFL KNLEAIIDPR TSFQASVEMA VRSRKQIVFT GHSSGGATAI LATVWYLEKY FIRNPNVYLE PRCVTFGAPL VGDSIFSHAL ...Sequence:
MAFEALTGIN GDLITRSWSA SKQAYLTERY HKEEAGAVVI FAFQPSFSEK DFFDPDNKSS FGEIKLNRVQ FPCMRKIGKG DVATVNEAFL KNLEAIIDPR TSFQASVEMA VRSRKQIVFT GHSSGGATAI LATVWYLEKY FIRNPNVYLE PRCVTFGAPL VGDSIFSHAL GREKWSRFFV NFVSRFDIVP RIMLARKASV EETLPHVLAQ LDPRKSSVQE SEQRITEFYT RVMRDTSTVA NQAVCELTGS AEAFLETLSS FLELSPYRPA GTFVFSTEKR LVAVNNSDAI LQMLFYTSQA SDEQEWSLIP FRSIRDHHSY EELVQSMGKK LFNHLDGENS IESTLNDLGV STRGRQYVQA ALEEEKKRVE NQKKIIQVIE QERFLKKLAW IEDEYKPKCQ AHKNGYYDSF KVSNEENDFK ANVKRAELAG VFDEVLGLMK KCQLPDEFEG DIDWIKLATR YRRLVEPLDI ANYHRHLKNE DTGPYMKRGR PTRYIYAQRG YEHYILKPNG MIAEDVFWNK VNGLNLGLQL EEIQETLKNS GSECGSCFWA EVEELKGKPY EEVEVRVKTL EGMLGEWITD GEVDDKEIFL EGSTFRKWWI TLPKNHKSHS PLRDYMMDEI TDT

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Experimental information

BeamInstrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.099 Å / Dist. spec. to detc.: 2.867 mm
DetectorName: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm
Scan
Title: Enhanced disease susceptibility 1 (EDS1) / Measurement date: May 19, 2015 / Storage temperature: 4 °C / Cell temperature: 4 °C / Exposure time: 2 sec. / Number of frames: 1495 / Unit: 1/nm /
MinMax
Q0.0364 4.9389
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 512 /
MinMax
Q0.229265 2.6335
P(R) point1 512
R0 10.53
Result
Type of curve: sec
Comments: The data were re-binned to calculate the p(r) profile and corresponding model fit.
ExperimentalPorod
MW72 kDa58 kDa
Volume-92 nm3

P(R)GuinierGuinier error
Forward scattering, I0152.6 151.87 0.47
Radius of gyration, Rg3.08 nm3.09 nm0.02

MinMax
D-10.53
Guinier point23 80

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