+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDEN9 |
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Sample | HcpR transcriptional regulator of Porphyromonas gingivalis
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Function / homology | Function and homology information |
Biological species | Porphyromonas gingivalis (strain ATCC BAA-308 / W83) (bacteria) |
Citation | Date: 2019 Apr 1 Title: Nitrosative stress sensing in Porphyromonas gingivalis: structure of and heme binding by the transcriptional regulator HcpR Authors: Belvin B / Musayev F / Burgner J / Scarsdale J / Escalante C |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDEN9 |
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-Related structure data
Similar structure data |
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-External links
Related items in Molecule of the Month |
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-Models
Model #2770 | Type: mix / Radius of dummy atoms: 1.90 A / Chi-square value: 0.655 Search similar-shape structures of this assembly by Omokage search (details) |
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Model #2771 | Type: mix / Radius of dummy atoms: 1.90 A / Chi-square value: 0.655 Search similar-shape structures of this assembly by Omokage search (details) |
Model #2772 | Type: mix / Radius of dummy atoms: 1.90 A / Chi-square value: 0.655 Search similar-shape structures of this assembly by Omokage search (details) |
-Sample
Sample | Name: HcpR transcriptional regulator of Porphyromonas gingivalis Specimen concentration: 2 mg/ml |
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Buffer | Name: 25 mM Tris 150 mM NaCl 1mM TCEP / pH: 7.5 |
Entity #1416 | Name: HcpR / Type: protein / Description: Hcp Transcriptional regulator / Formula weight: 25.495 / Num. of mol.: 2 Source: Porphyromonas gingivalis (strain ATCC BAA-308 / W83) References: UniProt: Q7MVK4 Sequence: MDPEFDLLLK AWKSSGLSVG MKDDELLALL ESCSYRVERL KAEELYAIGG DKLQDLRIVG VGEIRAEMVG PSGKQILIDT LAVGRILAPA LLFASENILP VTLFANEDSV LFRIGKEEFK GMMHKYPTLM ENFIGMISDI SAFLMKKIHQ LSLRSLQGKI GDYLFQLYTK ...Sequence: MDPEFDLLLK AWKSSGLSVG MKDDELLALL ESCSYRVERL KAEELYAIGG DKLQDLRIVG VGEIRAEMVG PSGKQILIDT LAVGRILAPA LLFASENILP VTLFANEDSV LFRIGKEEFK GMMHKYPTLM ENFIGMISDI SAFLMKKIHQ LSLRSLQGKI GDYLFQLYTK DGSNRIVVES SWKELSDRFG VNRQSLARSL SQLEEEGIIR VDGKSIEILQ PNRLSRL |
-Experimental information
Beam | Instrument name: Advanced Light Source (ALS) 12.3.1 (SIBYLS) City: Berkeley, CA / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.103 Å / Dist. spec. to detc.: 3.5 mm | |||||||||||||||||||||||||||||||||
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Detector | Name: Pilatus3 X 2M / Pixsize x: 172 mm | |||||||||||||||||||||||||||||||||
Scan | Title: HcpR transcriptional regulator of Porphyromonas gingivalis Measurement date: Jan 24, 2014 / Storage temperature: 4 °C / Cell temperature: 21 °C / Exposure time: 60 sec. / Unit: 1/A /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 418 /
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Result | Type of curve: single_conc /
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