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Yorodumi- SASDDY2: Leucine-rich repeat and fibronectin type-III domain-containing pr... -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDDY2 |
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Sample | Leucine-rich repeat and fibronectin type-III domain-containing protein 4: Fragment SALM3 LRR-Ig
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Function / homology | Function and homology information Synaptic adhesion-like molecules / regulation of postsynaptic density assembly / synaptic membrane adhesion / regulation of presynapse assembly / GABA-ergic synapse / postsynaptic density membrane / glutamatergic synapse / cell surface Similarity search - Function |
Biological species | Mus musculus (house mouse) |
Citation | Date: 2018 Jun 12 Title: The structure of SALM5 suggests a dimeric assembly for the presynaptic RPTP ligand recognition Authors: Karki S / Paudel P / Sele C / Shkumatov A |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDDY2 |
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-Related structure data
Related structure data | C: citing same article (ref.) |
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Similar structure data |
-External links
Related items in Molecule of the Month |
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-Models
Model #1724 | Type: dummy / Software: (r9684) / Radius of dummy atoms: 3.50 A / Symmetry: P1 / Comment: refinement of averaged (damstart.pdb) model / Chi-square value: 0.988 / P-value: 0.180658 Search similar-shape structures of this assembly by Omokage search (details) |
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Model #1726 | Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 1.153 / P-value: 0.041917 Search similar-shape structures of this assembly by Omokage search (details) |
Model #1727 | Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 1.153 / P-value: 0.041917 Search similar-shape structures of this assembly by Omokage search (details) |
Model #1728 | Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 1.153 / P-value: 0.041917 Search similar-shape structures of this assembly by Omokage search (details) |
Model #1729 | Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 1.153 / P-value: 0.041917 Search similar-shape structures of this assembly by Omokage search (details) |
Model #1730 | Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 1.153 / P-value: 0.041917 Search similar-shape structures of this assembly by Omokage search (details) |
Model #1731 | Type: atomic / Software: (r9684) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 1.153 / P-value: 0.041917 Search similar-shape structures of this assembly by Omokage search (details) |
-Sample
Sample | Name: Leucine-rich repeat and fibronectin type-III domain-containing protein 4: Fragment SALM3 LRR-Ig Specimen concentration: 12 mg/ml |
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Buffer | Name: 20 mM Tris HCl, 100 mM NaCl, 0.02% NaN3, / pH: 7.5 |
Entity #944 | Name: LRR-Ig / Type: protein Description: Leucine-rich repeat and fibronectin type-III domain-containing protein 4 Formula weight: 39.603 / Num. of mol.: 2 / Source: Mus musculus / References: UniProt: Q80XU8 Sequence: CPLPCVCQNL SESLSTLCAH RGLLFVPPNV DRRTVELRLA DNFIQALGPP DFRNMTGLVD LTLSRNAITR IGARSFGDLE SLRSLHLDGN RLVELGSSSL RGPVNLQHLI LSGNQLGRIA PGAFDDFLDS LEDLDVSYNN LRQVPWAGIG SMPALHTLNL DHNLIDALPP ...Sequence: CPLPCVCQNL SESLSTLCAH RGLLFVPPNV DRRTVELRLA DNFIQALGPP DFRNMTGLVD LTLSRNAITR IGARSFGDLE SLRSLHLDGN RLVELGSSSL RGPVNLQHLI LSGNQLGRIA PGAFDDFLDS LEDLDVSYNN LRQVPWAGIG SMPALHTLNL DHNLIDALPP GVFAQLSQLS RLDLTSNRLA TLAPDPLFSR GRDAEASPSP LVLSFSGNPL HCNCELLWLR RLARPDDLET CASPPTLAGR YFWAVPEGEF SCEPPLIARH TQRLWVLEGQ RATLRCRALG DPVPTMHWVG PDDRLVGNSS RAWAFPNGTL EIGVTGAGDA GAYTCIATNP AGEATARVEL RVLALGTRGS EVLFQ |
-Experimental information
Beam | Instrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.09919 Å / Dist. spec. to detc.: 2.867 mm | ||||||||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 1M | ||||||||||||||||||||||||||||||||||||
Scan | Title: Leucine-rich repeat and fibronectin type-III domain-containing protein 4: Fragment SALM3 LRR-Ig Measurement date: Jul 13, 2017 / Storage temperature: 4.7 °C / Cell temperature: 4.7 °C / Exposure time: 1 sec. / Number of frames: 1 / Unit: 1/nm /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 415 /
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Result | Type of curve: sec /
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