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Open data
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Basic information
Entry | Database: SASBDB / ID: SASDCJ3 |
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![]() | Bovine Serum Albumin
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Function / homology | ![]() cellular response to calcium ion starvation / enterobactin binding / negative regulation of mitochondrial depolarization / toxic substance binding / cellular response to starvation / fatty acid binding / pyridoxal phosphate binding / protein-containing complex / DNA binding / extracellular space ...cellular response to calcium ion starvation / enterobactin binding / negative regulation of mitochondrial depolarization / toxic substance binding / cellular response to starvation / fatty acid binding / pyridoxal phosphate binding / protein-containing complex / DNA binding / extracellular space / extracellular region / metal ion binding / cytoplasm Similarity search - Function |
Biological species | ![]() ![]() |
![]() | ![]() Title: 2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update. Authors: Jill Trewhella / Anthony P Duff / Dominique Durand / Frank Gabel / J Mitchell Guss / Wayne A Hendrickson / Greg L Hura / David A Jacques / Nigel M Kirby / Ann H Kwan / Javier Pérez / Lois ...Authors: Jill Trewhella / Anthony P Duff / Dominique Durand / Frank Gabel / J Mitchell Guss / Wayne A Hendrickson / Greg L Hura / David A Jacques / Nigel M Kirby / Ann H Kwan / Javier Pérez / Lois Pollack / Timothy M Ryan / Andrej Sali / Dina Schneidman-Duhovny / Torsten Schwede / Dmitri I Svergun / Masaaki Sugiyama / John A Tainer / Patrice Vachette / John Westbrook / Andrew E Whitten / ![]() ![]() ![]() ![]() ![]() ![]() ![]() Abstract: In 2012, preliminary guidelines were published addressing sample quality, data acquisition and reduction, presentation of scattering data and validation, and modelling for biomolecular small-angle ...In 2012, preliminary guidelines were published addressing sample quality, data acquisition and reduction, presentation of scattering data and validation, and modelling for biomolecular small-angle scattering (SAS) experiments. Biomolecular SAS has since continued to grow and authors have increasingly adopted the preliminary guidelines. In parallel, integrative/hybrid determination of biomolecular structures is a rapidly growing field that is expanding the scope of structural biology. For SAS to contribute maximally to this field, it is essential to ensure open access to the information required for evaluation of the quality of SAS samples and data, as well as the validity of SAS-based structural models. To this end, the preliminary guidelines for data presentation in a publication are reviewed and updated, and the deposition of data and associated models in a public archive is recommended. These guidelines and recommendations have been prepared in consultation with the members of the International Union of Crystallography (IUCr) Small-Angle Scattering and Journals Commissions, the Worldwide Protein Data Bank (wwPDB) Small-Angle Scattering Validation Task Force and additional experts in the field. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
-Data source
SASBDB page | ![]() |
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-Related structure data
Related structure data | C: citing same article ( |
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Similar structure data |
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External links
Related items in Molecule of the Month |
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-Models
Model #1249 | ![]() Type: dummy / Software: (on-line) / Radius of dummy atoms: 2.20 A / Symmetry: P1 / Chi-square value: 0.853 / P-value: 0.156000 ![]() |
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Model #1251 | ![]() Type: atomic / Software: (on-line) / Radius of dummy atoms: 1.90 A / Symmetry: P1 Comment: Multi-FoXS 1-state model based on PDB:4F5S chain A with residues 187-183 & 381-384 flexible Chi-square value: 1.05151837959 / P-value: 0.023000 ![]() |
Model #1254 | ![]() Type: atomic / Software: (on-line) / Radius of dummy atoms: 1.90 A / Symmetry: P1 Comment: Multi-FoXS e1-0 3-state model based on PDB:4F5S chain A with residues 187-183 & 381-384 flexible Chi-square value: 0.836161911667 / P-value: 0.170900 ![]() |
Model #1255 | ![]() Type: atomic / Software: (on-line) / Radius of dummy atoms: 1.90 A / Symmetry: P1 Comment: Multi-FoXS e1-1 3-state model based on PDB:4F5S chain A with residues 187-183 & 381-384 flexible Chi-square value: 0.836161911667 / P-value: 0.170900 ![]() |
Model #1256 | ![]() Type: atomic / Software: (on-line) / Radius of dummy atoms: 1.90 A / Symmetry: P1 Comment: Multi-FoXS e1-2 3-state model based on PDB:4F5S chain A with residues 187-183 & 381-384 flexible Chi-square value: 0.836161911667 / P-value: 0.170900 ![]() |
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Sample
![]() | Name: Bovine Serum Albumin / Specimen concentration: 0.56 mg/ml |
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Buffer | Name: 25 mM MOPS, 250 mM NaCl, 50 mM KCl, 2 mM TCEP, 0.1% NaN3 pH: 7.5 |
Entity #671 | Type: protein / Description: Serum albumin / Formula weight: 66.432 / Num. of mol.: 1 / Source: Bos taurus / References: UniProt: P02769 Sequence: DTHKSEIAHR FKDLGEEHFK GLVLIAFSQY LQQCPFDEHV KLVNELTEFA KTCVADESHA GCEKSLHTLF GDELCKVASL RETYGDMADC CEKQEPERNE CFLSHKDDSP DLPKLKPDPN TLCDEFKADE KKFWGKYLYE IARRHPYFYA PELLYYANKY NGVFQECCQA ...Sequence: DTHKSEIAHR FKDLGEEHFK GLVLIAFSQY LQQCPFDEHV KLVNELTEFA KTCVADESHA GCEKSLHTLF GDELCKVASL RETYGDMADC CEKQEPERNE CFLSHKDDSP DLPKLKPDPN TLCDEFKADE KKFWGKYLYE IARRHPYFYA PELLYYANKY NGVFQECCQA EDKGACLLPK IETMREKVLA SSARQRLRCA SIQKFGERAL KAWSVARLSQ KFPKAEFVEV TKLVTDLTKV HKECCHGDLL ECADDRADLA KYICDNQDTI SSKLKECCDK PLLEKSHCIA EVEKDAIPEN LPPLTADFAE DKDVCKNYQE AKDAFLGSFL YEYSRRHPEY AVSVLLRLAK EYEATLEECC AKDDPHACYS TVFDKLKHLV DEPQNLIKQN CDQFEKLGEY GFQNALIVRY TRKVPQVSTP TLVEVSRSLG KVGTRCCTKP ESERMPCTED YLSLILNRLC VLHEKTPVSE KVTKCCTESL VNRRPCFSAL TPDETYVPKA FDEKLFTFHA DICTLPDTEK QIKKQTALVE LLKHKPKATE EQLKTVMENF VAFVDKCCAA DDKEACFAVE GPKLVVSTQT ALA |
-Experimental information
Beam | Instrument name: Australian Synchrotron SAXS/WAXS / City: Melbourne / 国: Australia ![]() | ||||||||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm | ||||||||||||||||||||||||||||||||||||
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