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- SASDB39: Single stranded poly-deoxythymidine DNA (30mer, dT30) in 100 mM NaCl -

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Basic information

Entry
Database: SASBDB / ID: SASDB39
SampleSingle stranded poly-deoxythymidine DNA (30mer, dT30) in 100 mM NaCl
  • Poly-deoxythymidine (30mer) (DNA), dT30
CitationDate: 2017 Feb 25
Title: The impact of base stacking on the conformations and electrostatics of single-stranded DNA
Authors: Plumridge A / Meisburger S / Andresen K
Contact author
  • Alex Plumridge (Cornell University, Ithaca, NY, United States)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #1052
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 1 / Chi-square value: 0.9604
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Model #1053
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 2 / Chi-square value: 0.9604
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Model #1054
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: state 3 / Chi-square value: 0.9604
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Model #1055
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 4 / Chi-square value: 0.9604
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Model #1056
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 5 / Chi-square value: 0.9604
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Model #1057
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 6 / Chi-square value: 0.9604
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Model #1058
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 7 / Chi-square value: 0.9604
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Model #1059
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 8 / Chi-square value: 0.9604
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Model #1060
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 9 / Chi-square value: 0.9604
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Model #1061
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 10 / Chi-square value: 0.9604
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Model #1062
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 11 / Chi-square value: 0.9604
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Model #1063
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 12 / Chi-square value: 0.9604
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Model #1064
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 13 / Chi-square value: 0.9604
Model #1065
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 14 / Chi-square value: 0.9604
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Model #1066
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 15 / Chi-square value: 0.9604
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Model #1067
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 16 / Chi-square value: 0.9604
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Model #1068
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: Custom 17 / Chi-square value: 0.9604
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Model #1069
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 18 / Chi-square value: 0.9604
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Model #1071
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 19 / Chi-square value: 0.9604
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Model #1072
Type: dummy / Software: Custom / Radius of dummy atoms: 1.90 A / Comment: State 20 / Chi-square value: 0.9604
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Sample

SampleName: Single stranded poly-deoxythymidine DNA (30mer, dT30) in 100 mM NaCl
Specimen concentration: 0.50-1.80
BufferName: 1mM Na MOPS, 100mM NaCl / pH: 7
Entity #399Name: dT30 / Type: DNA / Description: Poly-deoxythymidine (30mer) / Formula weight: 9.064 / Num. of mol.: 1
Sequence:
TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT

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Experimental information

BeamInstrument name: Cornell High Energy Synchrotron Source (CHESS) G1
City: Ithaca, NY / 国: USA / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.1 Å / Dist. spec. to detc.: 1.8 mm
DetectorName: Finger Lakes CCD / Type: CCD
Scan
Title: Single stranded poly-deoxythymidine DNA (30mer, dT / Measurement date: Apr 1, 2015 / Storage temperature: 4 °C / Cell temperature: 22 °C / Exposure time: 10 sec. / Number of frames: 20 / Unit: 1/A /
MinMax
Q0.01 0.29
ResultExperimental MW: 10.4 kDa / Type of curve: extrapolated
GuinierGuinier error
Forward scattering, I043.35 0.4
Radius of gyration, Rg2.79 nm0.04

MinMax
Guinier point10 36

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