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Yorodumi- PDB-9s04: PYCR1 in complex with 1-(2,4-Difluorophenyl)-2-(1H-1,2,4-triazol-... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 9s04 | ||||||
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| Title | PYCR1 in complex with 1-(2,4-Difluorophenyl)-2-(1H-1,2,4-triazol-1- yl)ethanone | ||||||
Components | Isoform 3 of Pyrroline-5-carboxylate reductase 1, mitochondrial | ||||||
Keywords | OXIDOREDUCTASE / delta-1-pyrroline-5-carboxylate reductase / PYCR1 / cancer / crystallographic fragment screening (XFS) / molecular docking / inhibitors / proline metabolism | ||||||
| Function / homology | Function and homology informationpyrroline-5-carboxylate reductase / pyrroline-5-carboxylate reductase activity / L-proline biosynthetic process / Glutamate and glutamine metabolism / : / negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway / regulation of mitochondrial membrane potential / cellular response to oxidative stress / mitochondrial matrix / mitochondrion / identical protein binding Similarity search - Function | ||||||
| Biological species | Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.57 Å | ||||||
Authors | Ragin-Oh, W. / Czerwonka, D. / Ruszkowski, M. | ||||||
| Funding support | Poland, 1items
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Citation | Journal: Bioorg.Chem. / Year: 2025Title: Crystallographic fragment screening reveals new starting points for PYCR1 inhibitor design. Authors: Ragin-Oh, W. / Czerwonka, D. / Tran, L.H. / Forlani, G. / Ruszkowski, M. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 9s04.cif.gz | 649.6 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb9s04.ent.gz | Display | PDB format | |
| PDBx/mmJSON format | 9s04.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 9s04_validation.pdf.gz | 2 MB | Display | wwPDB validaton report |
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| Full document | 9s04_full_validation.pdf.gz | 1.9 MB | Display | |
| Data in XML | 9s04_validation.xml.gz | 69.1 KB | Display | |
| Data in CIF | 9s04_validation.cif.gz | 89.5 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/s0/9s04 ftp://data.pdbj.org/pub/pdb/validation_reports/s0/9s04 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 9rzzC ![]() 9s01C ![]() 9s02C C: citing same article ( |
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| Similar structure data | Similarity search - Function & homology F&H Search |
| Experimental dataset #1 | Data reference: 10.60884/VLUTJ1 / Data set type: diffraction image data |
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Assembly
| Deposited unit | ![]()
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| Components on special symmetry positions |
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: ens_1
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About Yorodumi



Homo sapiens (human)
X-RAY DIFFRACTION
Poland, 1items
Citation


PDBj





