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- PDB-9qit: Crystal structure of a D-lactate dehydrogenase in complex with D-... -

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Basic information

Entry
Database: PDB / ID: 9qit
TitleCrystal structure of a D-lactate dehydrogenase in complex with D-lactate from Porcellio dilatatus
ComponentsGlycolate oxidase
KeywordsOXIDOREDUCTASE / Gut metagenome / Oxidoreductases / Lactate dehydrogenases
Function / homologyFLAVIN-ADENINE DINUCLEOTIDE / : / LACTIC ACID
Function and homology information
Biological speciesPorcellio dilatatus (crustacean)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 3.04 Å
AuthorsBorges, P.T. / Frazao, C. / Martins, L.O.
Funding support Portugal, 1items
OrganizationGrant numberCountry
Foundation for Science and Technology (FCT) Portugal
CitationJournal: Appl.Environ.Microbiol. / Year: 2025
Title: Shotgun metagenomic mining reveals a new FAD-dependent D-lactate dehydrogenase in an isopod gut microbiome.
Authors: Coelho, C. / Taborda, A. / Lorena, C. / Frazao, T. / Verissimo, A. / Borges, P.T. / Brissos, V. / Tiago, I. / Martins, L.O.
History
DepositionMar 17, 2025Deposition site: PDBE / Processing site: PDBE
Revision 1.0Dec 3, 2025Provider: repository / Type: Initial release

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: Glycolate oxidase
B: Glycolate oxidase
C: Glycolate oxidase
D: Glycolate oxidase
E: Glycolate oxidase
F: Glycolate oxidase
G: Glycolate oxidase
H: Glycolate oxidase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)399,41533
Polymers391,7628
Non-polymers7,65325
Water00
1
A: Glycolate oxidase
E: Glycolate oxidase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)99,98810
Polymers97,9412
Non-polymers2,0478
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area8970 Å2
ΔGint-95 kcal/mol
Surface area32360 Å2
MethodPISA
2
B: Glycolate oxidase
F: Glycolate oxidase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)99,8408
Polymers97,9412
Non-polymers1,8996
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area8550 Å2
ΔGint-77 kcal/mol
Surface area32550 Å2
MethodPISA
3
C: Glycolate oxidase
G: Glycolate oxidase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)99,8408
Polymers97,9412
Non-polymers1,8996
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area8610 Å2
ΔGint-81 kcal/mol
Surface area32090 Å2
MethodPISA
4
D: Glycolate oxidase
H: Glycolate oxidase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)99,7487
Polymers97,9412
Non-polymers1,8075
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area8540 Å2
ΔGint-79 kcal/mol
Surface area31890 Å2
MethodPISA
Unit cell
Length a, b, c (Å)127.225, 109.644, 143.437
Angle α, β, γ (deg.)90.00, 98.26, 90.00
Int Tables number4
Space group name H-MP1211

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Components

#1: Protein
Glycolate oxidase


Mass: 48970.273 Da / Num. of mol.: 8
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Porcellio dilatatus (crustacean) / Gene: BDW27_113140 / Production host: Escherichia coli (E. coli)
#2: Chemical
ChemComp-GOL / GLYCEROL / GLYCERIN / PROPANE-1,2,3-TRIOL


Mass: 92.094 Da / Num. of mol.: 4 / Source method: obtained synthetically / Formula: C3H8O3
#3: Chemical
ChemComp-LAC / LACTIC ACID


Mass: 90.078 Da / Num. of mol.: 8 / Source method: obtained synthetically / Formula: C3H6O3
#4: Chemical
ChemComp-FAD / FLAVIN-ADENINE DINUCLEOTIDE


Mass: 785.550 Da / Num. of mol.: 8 / Source method: obtained synthetically / Formula: C27H33N9O15P2 / Comment: FAD*YM
#5: Chemical
ChemComp-FE / FE (III) ION


Mass: 55.845 Da / Num. of mol.: 5 / Source method: obtained synthetically / Formula: Fe
Has ligand of interestN
Has protein modificationN

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 2.61 Å3/Da / Density % sol: 52.92 %
Crystal growTemperature: 293 K / Method: vapor diffusion, hanging drop
Details: 0.2 M sodium formate, 0.1 M sodium phosphate pH 6.2, 20% (v/v) PEG Smear Medium and 10% (v/v) glycerol

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Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: ALBA / Beamline: XALOC / Wavelength: 0.97918 Å
DetectorType: DECTRIS PILATUS 6M / Detector: PIXEL / Date: Oct 19, 2023
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.97918 Å / Relative weight: 1
ReflectionResolution: 3.04→88.11 Å / Num. obs: 48050 / % possible obs: 91.6 % / Redundancy: 3.2 % / CC1/2: 0.985 / Net I/σ(I): 3.8
Reflection shellResolution: 3.04→3.29 Å / Num. unique obs: 2402 / CC1/2: 0.807

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Processing

Software
NameVersionClassification
PHENIX(1.20.1_4487: ???)refinement
XDSdata reduction
PHASERphasing
XDSdata scaling
RefinementMethod to determine structure: MOLECULAR REPLACEMENT / Resolution: 3.04→88.11 Å / SU ML: 0.37 / Cross valid method: FREE R-VALUE / σ(F): 1.37 / Phase error: 30.68 / Stereochemistry target values: ML
RfactorNum. reflection% reflection
Rfree0.2633 2343 4.89 %
Rwork0.2067 --
obs0.2095 47953 63.9 %
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL
Refinement stepCycle: LAST / Resolution: 3.04→88.11 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms26621 0 477 0 27098
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.00227560
X-RAY DIFFRACTIONf_angle_d0.46437559
X-RAY DIFFRACTIONf_dihedral_angle_d11.1919887
X-RAY DIFFRACTIONf_chiral_restr0.0414313
X-RAY DIFFRACTIONf_plane_restr0.0034931
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
3.04-3.110.6811110.3715307X-RAY DIFFRACTION7
3.11-3.170.3322270.3291590X-RAY DIFFRACTION14
3.17-3.250.3867380.3067876X-RAY DIFFRACTION21
3.25-3.330.3618660.30721124X-RAY DIFFRACTION27
3.33-3.420.3222670.27881410X-RAY DIFFRACTION33
3.42-3.520.3208820.28751711X-RAY DIFFRACTION41
3.52-3.630.28461230.26752056X-RAY DIFFRACTION49
3.63-3.760.3341290.25342389X-RAY DIFFRACTION57
3.76-3.910.33751430.21542745X-RAY DIFFRACTION66
3.91-4.090.31951860.20823320X-RAY DIFFRACTION79
4.09-4.310.25362060.19353860X-RAY DIFFRACTION93
4.31-4.580.24481950.184179X-RAY DIFFRACTION99
4.58-4.930.19612080.17164190X-RAY DIFFRACTION100
4.93-5.430.27522160.18464222X-RAY DIFFRACTION100
5.43-6.210.26741910.21744227X-RAY DIFFRACTION100
6.21-7.820.24412160.20334204X-RAY DIFFRACTION99
7.83-88.110.21732390.18594200X-RAY DIFFRACTION97
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
11.2505-1.0682-0.75991.68240.43140.51810.02980.1371-0.4638-0.11180.16130.66630.0817-0.48340.18060.1239-0.06380.00590.82290.23340.51-17.0524-8.708162.0278
22.1529-1.5417-0.53052.20241.25732.22050.0737-0.4106-0.57770.14890.17080.06010.23410.4069-0.10.28560.03060.01710.90430.37590.7374-15.9669-8.461856.2083
36.07792.43470.76994.24660.65262.3267-0.1848-0.0430.1471-0.0530.51730.94070.2913-0.4084-0.23210.5647-0.1577-0.00560.69250.14760.684-17.0231-3.3354.0459
42.8191-1.2572-0.25682.74660.17493.2864-0.16590.03310.08290.03960.2846-0.6160.67730.1322-0.19690.46480.0185-0.02780.5497-0.06510.48652.5547-12.09347.8574
55.61982.2433-0.04821.1508-0.09891.0971-0.1749-0.26790.1942-0.09970.27860.2480.0335-0.4958-0.04020.2156-0.0292-0.04820.3635-0.03860.4884-3.4379-8.158239.4143
60.27980.14810.01220.46080.29710.22150.12660.4355-0.0858-0.08490.18020.08110.1027-0.03150.08770.1978-0.0866-0.27530.64180.21910.4341-6.5592-10.533336.737
79.22689.12874.97159.51415.60663.65370.2013-0.2985-1.164-0.2447-0.1635-1.69570.2680.37270.19130.7492-0.2580.33630.55590.09740.978722.0877-6.556643.3058
85.50020.4272-1.36693.44022.25984.80520.4745-0.06580.5987-0.0626-0.4005-0.04-0.60850.0554-0.02940.33960.04170.02461.0447-0.0121.210819.987117.947746.8018
90.05430.04630.10210.04070.08850.1933-0.16010.2915-0.0659-0.07410.1408-0.0009-0.0318-0.011-0.06720.58280.2320.28521.11070.43340.708218.733210.533535.1409
100.2064-0.242-0.18450.8086-0.92122.67960.0925-0.63890.0360.495-0.0638-0.2856-0.5453-0.07860.2740.41660.0335-0.18770.8101-0.29880.457317.12999.488655.316
111.3653-0.2666-0.04650.1077-0.25261.2328-0.01661.0165-1.2757-0.5211-0.5775-0.3771-0.17780.50770.57321.0379-0.1714-0.01181.4196-0.16231.373527.72455.14638.2174
122.3794-0.9691-1.40960.84880.31191.26770.2416-0.39640.13680.18910.1563-0.51880.30860.21660.16030.47340.007-0.37450.8929-0.16240.764115.95166.831754.805
131.96590.02740.42671.73210.42840.85050.1318-0.18830.351-0.0595-0.0956-0.3551-0.0205-0.0705-0.06240.26690.1392-0.07670.6705-0.0640.71157.902219.258442.3901
141.3201-1.7536-0.13275.7953-0.68790.2307-0.3971-0.5917-0.31520.77450.3817-0.2724-0.10760.3688-0.30980.48250.24610.0470.6075-0.15280.49285.871817.530352.2028
150.1353-0.47160.06962.8954-0.14930.0438-0.0421-0.0833-0.04830.8363-0.05430.71380.0605-0.2397-0.20390.4368-0.08180.18341.02090.07240.3754-3.833322.141758.948
161.91720.46880.44772.927-0.68592.248-0.0779-0.01230.10270.38240.1180.421-0.1938-0.13690.03210.26840.03570.10720.66850.0080.6795-6.779613.341242.1626
173.33082.36070.11141.9292-1.21786.60060.46880.24740.6879-0.20490.39611.33150.0421-0.6009-0.55180.5220.077-0.10390.69280.15390.7969-19.56732.190941.6337
181.6727-0.3421.23551.92990.62741.8812-0.0646-0.13620.10730.09170.00940.0135-0.0246-0.0878-0.24490.2319-0.21910.02140.2573-0.13010.0247-85.6858.761461.5397
191.9368-1.7526-0.48221.61080.12293.8620.1262-0.09460.1827-0.0161-0.0429-0.0548-0.140.4781-0.210.2033-0.04990.12410.2168-0.150.2523-75.413824.708461.8496
200.01520.0031-0.00950.05270.01030.1659-0.0077-0.0226-0.0438-0.01430.0544-0.0190.07780.02860.53480.13190.09120.24960.02150.03950.2097-83.47368.889152.3396
210.15450.11440.01240.3459-0.0420.00880.07120.0007-0.02150.1053-0.02780.140.0715-0.12580.49250.1134-0.09970.1064-0.0811-0.164-0.0558-75.710818.291755.3989
221.37721.0202-0.20630.7649-0.04391.3332-0.15880.1496-0.20480.0128-0.02660.04420.3077-0.19050.21880.2618-0.0343-0.15450.06-0.11050.2505-62.98231.087346.5576
230.02310.0113-0.01570.0097-0.02290.06920.0259-0.0389-0.06010.0009-0.07210.00570.02550.1047-0.1368-0.1269-0.0920.137-0.18160.3697-0.4826-58.247312.12146.6137
240.356-0.06370.01530.294-0.43190.6758-0.09470.0531-0.0376-0.1119-0.1323-0.1520.08830.1881-1.11520.2979-0.15240.25110.17740.00310.0825-66.771115.130339.6131
25-0.00540.0033-0.00240.00220.01870.0209-0.05480.0743-0.1233-0.01450.0095-0.12030.04970.0146-0.4328-0.2611-0.07530.274-0.2533-0.4429-0.1634-69.207312.901436.6753
263.4067-1.42740.59680.6814-0.58011.4141-0.24230.02440.18470.38790.054-0.2947-0.10780.2645-0.01210.82540.5385-0.17480.96170.11611.4103-41.0614.875643.5865
270.85-0.08231.02742.08630.52381.43620.74640.23280.5124-0.48820.1237-0.9555-0.4755-0.1968-0.58740.7935-0.17870.36841.22980.15021.0153-42.997937.448743.2496
283.94571.34692.71552.7521.40894.07090.0229-1.21380.82950.5843-0.2167-0.2813-0.1917-0.40460.57040.38980.0356-0.2821.3342-0.2421.0697-47.752334.066753.4438
291.7314-0.0413-0.8433.5629-2.37342.0254-0.1140.1585-0.4650.4745-0.0838-1.0095-0.51640.75310.30920.4911-0.163-0.12741.2426-0.17541.2072-40.742828.401149.2976
300.67490.4385-0.14660.72470.81712.2987-0.2810.14-0.05890.12870.20040.25050.17220.1020.04880.9225-0.28440.37651.46070.3662.0291-35.802437.392144.0515
312.00460.5662-0.84082.7848-0.2162.9156-0.4152-0.4071-0.43510.46630.5287-0.9919-0.39681.1189-0.16140.6715-0.1322-0.36230.87540.07320.9019-49.621727.846556.3514
320.4346-0.2861-0.07770.1990.04920.0156-0.0128-0.22820.10890.07580.0928-0.0476-0.05180.08920.91820.3202-0.1311-0.04820.0975-0.1981-0.2724-56.831244.981547.3774
330.6230.559-0.30470.6017-0.5070.70890.2513-0.16330.16480.2437-0.04380.1574-0.1309-0.16270.76390.0572-0.20640.07060.28520.0677-0.0321-62.438641.232154.0497
340.00150.0036-0.0075-0.0005-0.0030.044-0.0603-0.00410.2081-0.0193-0.2193-0.0129-0.0622-0.0527-1.4269-0.1229-0.11980.026-0.3169-0.12140.1141-76.1631.004141.854
353.6507-0.4057-0.5532.23210.61913.1643-0.74170.3104-0.0117-0.24930.19150.2708-0.53640.230.36920.50050.0222-0.18811.16280.2880.698-15.981956.91839.1146
364.4585-2.08660.10272.99560.06420.08270.18631.00150.3039-0.77820.31310.40.0385-0.2589-0.00610.4253-0.0735-0.1080.86250.29290.5568-14.917154.934616.0798
373.07572.0319-0.3832.3650.1450.20290.172-0.00330.2698-0.22790.18540.5265-0.0815-0.221-0.23390.6093-0.327-0.12460.79470.41560.9462-0.184968.965522.5038
382.1912-0.2584-0.77441.37580.63712.76210.39850.4235-0.1463-0.14640.221-0.381-0.22540.1147-0.36960.3299-0.1388-0.04450.62250.04620.65623.473458.74327.1053
391.3084-0.0019-0.19210.1493-0.04560.24140.0206-0.05130.20010.01820.03460.1001-0.03170.05150.07430.17310.0937-0.08850.6312-0.23870.7197-6.292660.86740.0724
400.07080.27880.16791.5974-0.31922.3946-0.20660.29290.1648-0.24010.4117-0.4849-0.34730.30160.09990.4404-0.0646-0.13610.48080.02130.65961.013558.212129.7933
414.10911.3968-1.27411.58760.16545.23690.34210.27390.71920.0883-0.224-0.73230.57650.31710.17280.64630.10160.17831.1347-0.31611.454621.298535.600928.3513
422.4793-0.1739-1.01613.4337-0.62733.49160.48080.05930.6285-0.38470.678-0.13990.6398-0.3387-0.89410.5932-0.1372-0.0041.4963-0.0750.670816.419138.953316.8207
434.48270.0941-0.2050.3213-0.53330.90330.2042-0.0740.9204-0.09660.0137-0.4974-0.24610.3695-0.53980.41410.19750.22650.9145-0.15041.315324.067743.044727.0899
442.31531.89150.26882.8962-0.29960.2382-0.11610.4962-0.209-0.18910.1293-0.37830.10980.5809-0.14280.96090.382-0.11341.805-0.42891.562827.365636.911533.1261
451.86090.28730.43151.91391.07322.38090.1903-0.011-0.175-0.03940.3272-0.7118-0.15780.0948-0.30630.73640.3914-0.221.9207-0.22841.984829.997240.589622.5645
462.22382.46561.55656.4268-0.06416.4015-0.0303-0.34080.5882-0.29790.2316-0.39930.13190.9354-0.22481.21320.3849-0.10231.0089-0.05530.848919.344946.733916.9648
473.7426-0.25760.05283.19461.25988.75120.68520.70130.1115-0.77340.1334-0.1823-0.8762-0.7084-0.56820.62340.11930.22470.6439-0.10770.91524.667237.747717.6026
481.46421.7820.94522.33060.65312.02990.16260.1863-0.0034-0.2238-0.0369-0.69650.00720.392-0.12360.56260.24660.06230.8662-0.19350.69536.835829.668322.4365
491.3080.9241-2.60344.6792-4.20816.5745-0.47280.88820.5259-0.7147-0.31930.17580.0114-0.58710.40520.71610.081-0.09270.78930.1750.5286-4.484126.36513.0088
500.3808-0.8111-0.32631.76690.96642.2368-0.1773-0.0198-0.47760.07140.0940.2430.37090.33890.35470.26530.09540.12410.4222-0.18040.6578-0.529228.984831.136
511.1841-0.01070.22881.2154-0.0672.28390.21160.3937-0.3195-0.2423-0.15460.35060.6426-0.4459-0.07650.5985-0.1142-0.06640.575-0.0860.3965-13.571642.257329.7449
520.36680.00050.07760.04860.0390.2139-0.1689-0.21030.15310.0545-0.0003-0.065-0.2375-0.1528-0.5860.88960.0518-0.44880.82230.31890.6269-85.311586.854710.3217
530.2055-0.10920.27350.0511-0.12590.7313-0.1305-0.06490.10120.03180.05330.0084-0.2872-0.1068-0.4710.5677-0.2782-0.240.41930.1556-0.0673-76.580776.82412.1179
540.40260.07350.25310.20610.36410.7782-0.1271-0.04780.1887-0.0725-0.14760.0073-0.28870.0009-0.45560.4992-0.2802-0.27150.51170.14230.2383-79.214476.384418.7584
550.5983-0.20780.46470.3241-0.08361.6108-0.05510.08510.0392-0.0873-0.00070.0541-0.1315-0.0551-0.34230.8831-0.2863-0.32820.59390.09840.2368-77.17777.83314.8284
560.01020.01440.0196-0.00010.00150.0207-0.19150.14630.0373-0.18220.08170.0424-0.1107-0.07050.13130.6007-0.4181-0.11270.0483-0.1248-0.0667-57.702382.848325.4099
574.0649-0.32610.28785.4164-0.56052.78190.0851-0.0947-0.04630.54920.19410.43990.103-0.2801-0.00070.1559-0.0327-0.00690.14850.11070.3676-61.197779.209634.4093
580.78870.2237-0.150.80230.29710.44030.03290.2040.1307-0.24960.09350.30930.0374-0.28970.54270.0361-0.0837-0.09240.2340.04050.111-70.700983.099633.6117
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840.6838-0.3029-0.35343.4122-1.6931.74060.3746-0.5286-0.7316-0.6089-0.5127-0.1520.6988-0.0571-0.03180.7508-0.0713-0.21880.86520.15740.597-9.8448-18.945222.1484
850.00850.10070.0490.94130.44540.2110.00040.0826-0.2469-0.29360.02990.4803-0.0275-0.16980.20460.4547-0.2555-0.12111.01890.08950.5243-20.1678-5.783324.7912
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870.2283-0.1380.18120.35250.12441.25330.0380.04080.00840.0062-0.0384-0.00860.12020.17570.06290.5451-0.1943-0.19660.58610.22020.1896-76.940129.04660.2611
880.3252-0.22580.2560.4646-0.77371.43850.06970.2026-0.0052-0.35720.05510.01450.3509-0.20320.15810.5363-0.15480.02340.19920.1580.1583-75.631822.70776.6208
890.0372-0.0208-0.00960.3066-0.13330.08320.09380.05190.1652-0.27730.14460.0666-0.2249-0.07511.90520.3874-0.10170.1301-0.68210.1292-0.2299-64.745826.043216.3998
900.2888-0.1803-0.15090.70120.51770.4945-0.04340.0166-0.11970.01930.0145-0.03820.05990.02360.10510.25570.15910.2246-0.1794-0.19580.047-69.204629.796127.0534
910.1264-0.1157-0.12390.12440.0850.1290.0093-0.01310.1375-0.03270.066-0.129-0.04410.0327-0.0773-0.13070.14760.11820.0093-0.1203-0.119-67.723626.353428.3927
923.1538-1.4908-3.03870.74681.58623.4546-0.02010.1304-0.0476-00.1597-0.12370.03290.2269-0.1050.44760.13660.34130.6404-0.03591.2721-41.71320.783323.0586
935.6023-0.91961.91141.2119-0.5915.3870.5882-0.336-0.74940.06710.3808-0.72770.86130.1143-0.56710.65260.16240.02490.4921-0.10920.6812-48.6336-0.728820.1883
940.2034-0.2932-0.2310.88670.14110.33750.07370.01480.07430.00010.0783-0.17310.03440.1160.13250.46380.28020.05790.2719-0.26510.3337-47.634.634311.0419
951.5359-0.2582-1.52980.9702-0.68682.4827-0.2681-0.60630.16770.22670.3835-0.4244-0.18710.4413-0.71720.9460.33420.14390.6482-0.34291.1136-40.2278-1.362424.4082
960.9758-0.45590.15976.40882.81891.42610.14610.4745-0.2283-0.72310.1792-0.00990.2270.1427-0.08311.07020.3945-0.29661.826-0.28071.4651-36.65674.32914.9088
970.0891-0.0588-0.02880.09670.07840.2098-0.040.1418-0.0381-0.0615-0.07460.09160.1473-0.0713-0.48030.2955-0.0937-0.00480.0542-0.2551-0.0278-57.52923.972913.2464
980.10610.00470.1540.1895-0.14490.58810.0261-0.0874-0.03210.0190.0521-0.04520.2091-0.01510.26630.44550.1026-0.0420.07640.1215-0.1549-63.531-2.786912.2892
990.1771-0.3222-0.30781.16761.20532.1879-0.25550.23750.0371-0.40510.01420.0929-0.3675-0.07430.11160.6484-0.33230.08720.3903-0.14390.2071-75.4624-4.63843.4687
1001.14620.82890.08061.264-0.83583.8751-0.08760.12060.043-0.12560.12470.0548-0.0518-0.0558-00.3658-0.27060.01630.32410.00780.0943-72.4824-3.114716.3168
1010.019-0.02110.01390.0096-0.01110.0080.0202-0.0732-0.12480.0131-0.05520.07930.0736-0.0387-0.26830.0242-0.2553-0.08750.081-0.04930.1029-75.80936.405224.3985
1020.4589-0.38250.14590.61590.38990.9289-0.07450.0345-0.1105-0.13690.0110.16220.0472-0.14470.23670.1032-0.0774-0.04350.0932-0.00110.1408-83.588519.94322.1867
1031.3454-0.2224-1.10423.66111.24843.8502-0.1294-0.476-0.33521.0891-0.23280.72720.40310.28160.49540.6154-0.19970.19780.86040.27520.6311-24.708137.790965.4481
1043.3291-1.4622-0.77522.572-0.3935.3634-0.0511-0.9120.19060.36540.5507-0.3123-0.7904-0.5794-0.34850.42480.0463-0.1250.78730.01350.5358-13.790948.317968.0927
1053.25990.28420.14815.58160.55922.7921-0.1323-0.1703-0.38520.52510.3892-0.10390.2595-0.5778-0.30490.49590.04770.12540.5464-0.03880.567-15.317645.21859.1202
1063.1422-1.5084-1.3073.14660.08793.88570.1165-0.54080.3854-0.51880.0221-0.76240.32340.7110.01890.43730.0439-0.03650.5661-0.11070.43594.074742.382654.5854
1070.1004-0.0573-0.08740.10060.00640.23190.03760.00690.1194-0-0.0469-0.3381-0.00790.2308-0.22130.0399-0.054-0.31420.6314-0.14870.8171-1.325747.626546.9369
1080.54870.9008-0.45411.6122-0.1373.1621-0.07980.07740.25750.2138-0.5069-0.74790.33810.25930.18080.4198-0.0249-0.19711.1837-0.03451.169123.451458.604551.3849
1092.1835-0.91160.07151.9454-0.50580.9223-0.29740.25180.3691-0.60960.57110.2137-0.1165-0.5139-0.17580.8068-0.3045-0.48141.28660.47161.882316.347576.482848.12
1102.9466-0.24171.09730.7562-0.21541.33720.0463-0.31480.3770.1476-0.0339-0.0464-0.0153-0.0368-0.11930.3134-0.0822-0.27550.9854-0.10510.866515.064666.312548.3462
1113.97320.19820.69240.4492-0.43490.62270.0389-0.3170.03480.0812-0.13570.0977-0.0676-0.11430.02040.4563-0.2394-0.15531.153-0.24631.134418.512266.751852.3235
1124.75850.4614-0.14882.0084-1.04283.5125-0.30930.0273-0.4301-0.3493-0.0037-0.648-0.76190.13540.29671.3065-0.2491-0.37451.92460.06811.280526.290665.573244.3441
1131.36920.097-0.2370.00880.00030.17380.1583-0.5082-0.32080.0089-0.16690.03960.12460.4203-0.44330.904-0.0751-0.70081.45490.03421.542423.956967.70356.5717
1141.6282-0.66280.28241.0449-0.38440.1422-0.412-0.1352-0.12460.0725-0.19920.2240.5591-0.34910.52191.41050.67040.15831.594-0.08080.97136.081364.908266.9756
1150.6833-0.150.59720.2358-0.23641.5230.2417-0.15720.0311-0.02410.2436-0.0947-0.1577-0.2481-0.01770.27380.08650.06070.5766-0.09951.06971.428471.485150.5035
1160.6948-0.3722-0.89682.04360.60963.15050.1803-0.2319-0.40250.4693-0.1188-0.4472-0.0990.0732-0.16310.6122-0.0942-0.00161.0549-0.35711.21542.072177.948856.1215
1176.5566-2.7659-0.13194.65390.27111.8463-0.6369-1.3895-0.53991.2224-0.31751.4398-0.235-0.77630.71270.90770.13410.231.1846-0.0840.9806-5.864774.531563.7079
1181.1381.53240.04513.1354-1.23121.56220.27760.23310.41920.1939-0.2130.3552-0.1774-0.24350.07260.39050.2246-0.09690.7109-0.09970.5991-13.893462.407947.9335
1190.051-0.0581-0.10850.06350.12790.25280.0322-0.17960.21960.04950.07790.064-0.0512-0.11240.64840.18210.13850.31730.0795-0.1499-0.1265-78.384267.853765.8266
1200.38890.00140.05021.4031-0.12930.1910.2847-0.2951-0.494-0.19240.10420.30570.2808-0.55810.00870.4744-0.1986-0.10761.2849-0.20280.5378-88.186263.398356.5206
1210.00570.00690.04760.01910.10930.3174-0.02630.06950.01270.1491-0.06780.1489-0.0285-0.222-0.42510.173-0.04440.41540.1173-0.0627-0.0389-71.154569.400759.4414
1220.04530.0134-0.00810.00270.00010.00160.0109-0.13280.06510.0841-0.02720.047-0.04030.04160.42960.12210.1212-0.0067-0.0376-0.0279-0.3844-56.766170.889853.3581
1230.08580.0918-0.06210.2108-0.13180.10410.03070.09680.0776-0.00150.16480.14220.0679-0.18770.8983-0.1001-0.26520.114-0.23170.1359-0.2244-67.264168.80344.1666
1242.83072.37451.73072.01451.57351.61670.1905-0.2154-0.00020.12580.0908-0.3581-0.02010.2494-0.13670.12370.0177-0.01110.3301-0.25780.3637-41.711675.134249.2797
1251.8194-1.0536-0.06141.350.56230.85610.027-0.11990.49930.1660.0511-0.0008-0.58350.14720.18650.3958-0.0883-0.07250.1069-0.05340.3598-46.357899.452348.351
1264.5405-2.2869-1.93072.19142.13756.06140.16960.01110.4818-0.1291-0.0285-0.0832-0.2387-0.22270.04310.2518-0.0104-0.17030.13510.02060.7211-47.915390.039146.3103
1272.5110.60421.81084.12-0.74642.17960.1522-0.25770.63680.8039-0.1521-0.1747-0.13770.09010.47510.9787-0.3348-0.02110.3408-0.010.9747-47.4696102.497860.4392
1282.63622.67420.65375.26040.87412.3207-0.21110.5238-0.8065-0.34430.5076-1.1090.33540.3088-0.87240.2496-0.1427-0.09720.2-0.07350.4714-39.491485.481846.7697
1290.12430.3686-0.08121.3013-0.15170.46990.08320.0680.283-0.05830.09660.03-0.2377-0.01030.340.3657-0.18540.0590.3080.15010.7165-38.28397.033147.4201
1300.3055-0.1402-0.01780.0640.00940.09210.0348-0.0385-0.03620.0282-0.01480.0913-0.0116-0.06280.09210.1440.06410.08440.8094-0.03090.7967-42.019485.275359.2674
1313.1243-1.2952-1.27743.3642.66782.1396-0.3678-0.5259-0.10070.4096-0.04950.45940.3457-0.06740.36991.8721.0898-0.23231.917-0.34970.9805-58.056388.450268.3034
1321.94170.62610.74051.48591.04191.65750.21-0.2761-0.21090.2298-0.1072-0.10370.1101-0.0909-0.19270.2169-0.0521-0.17540.18070.01270.7746-61.863896.574152.6337
1330.8061-0.24590.7771.0657-0.3920.77440.0207-0.6890.29690.70890.3714-0.0194-0.3894-0.0958-0.12190.54080.01840.10420.369-0.14590.2637-66.004999.026760.6068
1340.2877-0.3747-0.07330.7347-0.19180.3865-0.0925-0.0270.021-0.02070.04010.15120.00270.025-0.18160.32190.1372-0.25220.19070.18560.5004-73.582891.012147.9965
1350.23820.3515-0.40010.5952-0.43390.99750.0484-0.01690.00320.03040.03580.04880.0102-0.13470.31370.0512-0.04980.01320.3120.27950.0967-83.412977.394847.5038
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1(chain A and resid 3:33)
2X-RAY DIFFRACTION2(chain A and resid 34:56)
3X-RAY DIFFRACTION3(chain A and resid 57:85)
4X-RAY DIFFRACTION4(chain A and resid 86:153)
5X-RAY DIFFRACTION5(chain A and resid 154:174)
6X-RAY DIFFRACTION6(chain A and resid 175:213)
7X-RAY DIFFRACTION7(chain A and resid 214:223)
8X-RAY DIFFRACTION8(chain A and resid 224:236)
9X-RAY DIFFRACTION9(chain A and resid 237:246)
10X-RAY DIFFRACTION10(chain A and resid 247:281)
11X-RAY DIFFRACTION11(chain A and resid 282:301)
12X-RAY DIFFRACTION12(chain A and resid 302:340)
13X-RAY DIFFRACTION13(chain A and resid 341:357)
14X-RAY DIFFRACTION14(chain A and resid 358:382)
15X-RAY DIFFRACTION15(chain A and resid 383:401)
16X-RAY DIFFRACTION16(chain A and resid 402:435)
17X-RAY DIFFRACTION17(chain A and resid 436:460)
18X-RAY DIFFRACTION18(chain B and resid 3:21)
19X-RAY DIFFRACTION19(chain B and resid 22:42)
20X-RAY DIFFRACTION20(chain B and resid 43:63)
21X-RAY DIFFRACTION21(chain B and resid 64:94)
22X-RAY DIFFRACTION22(chain B and resid 95:99)
23X-RAY DIFFRACTION23(chain B and resid 100:152)
24X-RAY DIFFRACTION24(chain B and resid 153:175)
25X-RAY DIFFRACTION25(chain B and resid 176:214)
26X-RAY DIFFRACTION26(chain B and resid 215:221)
27X-RAY DIFFRACTION27(chain B and resid 222:246)
28X-RAY DIFFRACTION28(chain B and resid 247:259)
29X-RAY DIFFRACTION29(chain B and resid 260:294)
30X-RAY DIFFRACTION30(chain B and resid 295:308)
31X-RAY DIFFRACTION31(chain B and resid 309:340)
32X-RAY DIFFRACTION32(chain B and resid 341:366)
33X-RAY DIFFRACTION33(chain B and resid 367:404)
34X-RAY DIFFRACTION34(chain B and resid 405:460)
35X-RAY DIFFRACTION35(chain C and resid 3:33)
36X-RAY DIFFRACTION36(chain C and resid 34:92)
37X-RAY DIFFRACTION37(chain C and resid 93:99)
38X-RAY DIFFRACTION38(chain C and resid 100:175)
39X-RAY DIFFRACTION39(chain C and resid 176:194)
40X-RAY DIFFRACTION40(chain C and resid 195:218)
41X-RAY DIFFRACTION41(chain C and resid 219:243)
42X-RAY DIFFRACTION42(chain C and resid 244:266)
43X-RAY DIFFRACTION43(chain C and resid 271:289)
44X-RAY DIFFRACTION44(chain C and resid 290:303)
45X-RAY DIFFRACTION45(chain C and resid 304:313)
46X-RAY DIFFRACTION46(chain C and resid 314:325)
47X-RAY DIFFRACTION47(chain C and resid 326:346)
48X-RAY DIFFRACTION48(chain C and resid 347:383)
49X-RAY DIFFRACTION49(chain C and resid 384:400)
50X-RAY DIFFRACTION50(chain C and resid 401:410)
51X-RAY DIFFRACTION51(chain C and resid 411:460)
52X-RAY DIFFRACTION52(chain D and resid 3:19)
53X-RAY DIFFRACTION53(chain D and resid 20:56)
54X-RAY DIFFRACTION54(chain D and resid 57:78)
55X-RAY DIFFRACTION55(chain D and resid 79:93)
56X-RAY DIFFRACTION56(chain D and resid 94:158)
57X-RAY DIFFRACTION57(chain D and resid 159:164)
58X-RAY DIFFRACTION58(chain D and resid 165:214)
59X-RAY DIFFRACTION59(chain D and resid 215:219)
60X-RAY DIFFRACTION60(chain D and resid 220:241)
61X-RAY DIFFRACTION61(chain D and resid 242:264)
62X-RAY DIFFRACTION62(chain D and resid 265:284)
63X-RAY DIFFRACTION63(chain D and resid 285:323)
64X-RAY DIFFRACTION64(chain D and resid 324:346)
65X-RAY DIFFRACTION65(chain D and resid 347:380)
66X-RAY DIFFRACTION66(chain D and resid 381:389)
67X-RAY DIFFRACTION67(chain D and resid 390:408)
68X-RAY DIFFRACTION68(chain D and resid 409:460)
69X-RAY DIFFRACTION69(chain E and resid 3:24)
70X-RAY DIFFRACTION70(chain E and resid 25:29)
71X-RAY DIFFRACTION71(chain E and resid 30:63)
72X-RAY DIFFRACTION72(chain E and resid 64:88)
73X-RAY DIFFRACTION73(chain E and resid 89:153)
74X-RAY DIFFRACTION74(chain E and resid 154:180)
75X-RAY DIFFRACTION75(chain E and resid 181:220)
76X-RAY DIFFRACTION76(chain E and resid 221:264)
77X-RAY DIFFRACTION77(chain E and resid 265:273)
78X-RAY DIFFRACTION78(chain E and resid 274:282)
79X-RAY DIFFRACTION79(chain E and resid 283:304)
80X-RAY DIFFRACTION80(chain E and resid 305:311)
81X-RAY DIFFRACTION81(chain E and resid 312:355)
82X-RAY DIFFRACTION82(chain E and resid 356:385)
83X-RAY DIFFRACTION83(chain E and resid 386:401)
84X-RAY DIFFRACTION84(chain E and resid 402:432)
85X-RAY DIFFRACTION85(chain E and resid 433:460)
86X-RAY DIFFRACTION86(chain F and resid 3:14)
87X-RAY DIFFRACTION87(chain F and resid 15:27)
88X-RAY DIFFRACTION88(chain F and resid 28:50)
89X-RAY DIFFRACTION89(chain F and resid 51:158)
90X-RAY DIFFRACTION90(chain F and resid 159:181)
91X-RAY DIFFRACTION91(chain F and resid 182:213)
92X-RAY DIFFRACTION92(chain F and resid 214:220)
93X-RAY DIFFRACTION93(chain F and resid 221:255)
94X-RAY DIFFRACTION94(chain F and resid 256:287)
95X-RAY DIFFRACTION95(chain F and resid 288:305)
96X-RAY DIFFRACTION96(chain F and resid 306:313)
97X-RAY DIFFRACTION97(chain F and resid 314:355)
98X-RAY DIFFRACTION98(chain F and resid 356:384)
99X-RAY DIFFRACTION99(chain F and resid 385:396)
100X-RAY DIFFRACTION100(chain F and resid 397:402)
101X-RAY DIFFRACTION101(chain F and resid 403:440)
102X-RAY DIFFRACTION102(chain F and resid 441:460)
103X-RAY DIFFRACTION103(chain G and resid 3:8)
104X-RAY DIFFRACTION104(chain G and resid 9:46)
105X-RAY DIFFRACTION105(chain G and resid 47:83)
106X-RAY DIFFRACTION106(chain G and resid 84:131)
107X-RAY DIFFRACTION107(chain G and resid 132:215)
108X-RAY DIFFRACTION108(chain G and resid 216:225)
109X-RAY DIFFRACTION109(chain G and resid 226:243)
110X-RAY DIFFRACTION110(chain G and resid 244:253)
111X-RAY DIFFRACTION111(chain G and resid 276:281)
112X-RAY DIFFRACTION112(chain G and resid 282:300)
113X-RAY DIFFRACTION113(chain G and resid 301:322)
114X-RAY DIFFRACTION114(chain G and resid 323:335)
115X-RAY DIFFRACTION115(chain G and resid 336:349)
116X-RAY DIFFRACTION116(chain G and resid 350:375)
117X-RAY DIFFRACTION117(chain G and resid 376:399)
118X-RAY DIFFRACTION118(chain G and resid 400:460)
119X-RAY DIFFRACTION119(chain H and resid 3:56)
120X-RAY DIFFRACTION120(chain H and resid 57:63)
121X-RAY DIFFRACTION121(chain H and resid 64:101)
122X-RAY DIFFRACTION122(chain H and resid 102:153)
123X-RAY DIFFRACTION123(chain H and resid 154:212)
124X-RAY DIFFRACTION124(chain H and resid 213:221)
125X-RAY DIFFRACTION125(chain H and resid 222:241)
126X-RAY DIFFRACTION126(chain H and resid 242:253)
127X-RAY DIFFRACTION127(chain H and resid 254:275)
128X-RAY DIFFRACTION128(chain H and resid 276:292)
129X-RAY DIFFRACTION129(chain H and resid 293:309)
130X-RAY DIFFRACTION130(chain H and resid 310:324)
131X-RAY DIFFRACTION131(chain H and resid 325:332)
132X-RAY DIFFRACTION132(chain H and resid 333:354)
133X-RAY DIFFRACTION133(chain H and resid 355:401)
134X-RAY DIFFRACTION134(chain H and resid 402:435)
135X-RAY DIFFRACTION135(chain H and resid 436:460)

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