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- PDB-9qgz: Crystal structure of a D-lactate dehydrogenase from Porcellio dil... -

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Basic information

Entry
Database: PDB / ID: 9qgz
TitleCrystal structure of a D-lactate dehydrogenase from Porcellio dilatatus
ComponentsGlycolate oxidase
KeywordsOXIDOREDUCTASE / Gut metagenome / Oxidoreductases / Lactate dehydrogenases
Function / homologyFLAVIN-ADENINE DINUCLEOTIDE / :
Function and homology information
Biological speciesPorcellio dilatatus (crustacean)
MethodX-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.84 Å
AuthorsBorges, P.T. / Frazao, C. / Martins, L.O.
Funding support Portugal, 1items
OrganizationGrant numberCountry
Foundation for Science and Technology (FCT) Portugal
CitationJournal: Appl.Environ.Microbiol. / Year: 2025
Title: Shotgun metagenomic mining reveals a new FAD-dependent D-lactate dehydrogenase in an isopod gut microbiome.
Authors: Coelho, C. / Taborda, A. / Lorena, C. / Frazao, T. / Verissimo, A. / Borges, P.T. / Brissos, V. / Tiago, I. / Martins, L.O.
History
DepositionMar 14, 2025Deposition site: PDBE / Processing site: PDBE
Revision 1.0Dec 3, 2025Provider: repository / Type: Initial release

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: Glycolate oxidase
B: Glycolate oxidase
C: Glycolate oxidase
D: Glycolate oxidase
E: Glycolate oxidase
F: Glycolate oxidase
G: Glycolate oxidase
H: Glycolate oxidase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)398,49324
Polymers391,7628
Non-polymers6,73116
Water64936
1
A: Glycolate oxidase
B: Glycolate oxidase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)99,6236
Polymers97,9412
Non-polymers1,6834
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area8680 Å2
ΔGint-95 kcal/mol
Surface area32070 Å2
MethodPISA
2
C: Glycolate oxidase
hetero molecules

E: Glycolate oxidase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)99,6236
Polymers97,9412
Non-polymers1,6834
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
crystal symmetry operation1_456x-1,y,z+11
Buried area8470 Å2
ΔGint-92 kcal/mol
Surface area33000 Å2
MethodPISA
3
D: Glycolate oxidase
hetero molecules

F: Glycolate oxidase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)99,6236
Polymers97,9412
Non-polymers1,6834
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
crystal symmetry operation1_554x,y,z-11
Buried area8940 Å2
ΔGint-96 kcal/mol
Surface area32820 Å2
MethodPISA
4
G: Glycolate oxidase
H: Glycolate oxidase
hetero molecules


Theoretical massNumber of molelcules
Total (without water)99,6236
Polymers97,9412
Non-polymers1,6834
Water362
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Buried area8510 Å2
ΔGint-91 kcal/mol
Surface area32480 Å2
MethodPISA
Unit cell
Length a, b, c (Å)69.668, 103.920, 143.827
Angle α, β, γ (deg.)81.94, 77.24, 75.41
Int Tables number1
Space group name H-MP1

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Components

#1: Protein
Glycolate oxidase


Mass: 48970.273 Da / Num. of mol.: 8
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Porcellio dilatatus (crustacean) / Gene: BDW27_113140 / Production host: Escherichia coli (E. coli)
#2: Chemical
ChemComp-FAD / FLAVIN-ADENINE DINUCLEOTIDE


Mass: 785.550 Da / Num. of mol.: 8 / Source method: obtained synthetically / Formula: C27H33N9O15P2 / Feature type: SUBJECT OF INVESTIGATION / Comment: FAD*YM
#3: Chemical
ChemComp-FE / FE (III) ION


Mass: 55.845 Da / Num. of mol.: 8 / Source method: obtained synthetically / Formula: Fe / Feature type: SUBJECT OF INVESTIGATION
#4: Water ChemComp-HOH / water


Mass: 18.015 Da / Num. of mol.: 36 / Source method: isolated from a natural source / Formula: H2O
Has ligand of interestY
Has protein modificationN

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION / Number of used crystals: 1

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Sample preparation

CrystalDensity Matthews: 2.65 Å3/Da / Density % sol: 53.65 %
Crystal growTemperature: 293.15 K / Method: vapor diffusion, hanging drop
Details: 0.2 M sodium formate, 0.1 M sodium phosphate pH 6.2, 20 % (v/v) PEG Smear Medium and 10 % (v/v) glycerol

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Data collection

DiffractionMean temperature: 100 K / Serial crystal experiment: N
Diffraction sourceSource: SYNCHROTRON / Site: ESRF / Beamline: ID30B / Wavelength: 0.873128 Å
DetectorType: DECTRIS EIGER2 X 9M / Detector: PIXEL / Date: May 15, 2024
RadiationProtocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelengthWavelength: 0.873128 Å / Relative weight: 1
ReflectionResolution: 2.84→78.15 Å / Num. obs: 46387 / % possible obs: 89.2 % / Redundancy: 1.8 % / CC1/2: 0.987 / Rpim(I) all: 0.103 / Net I/σ(I): 3.7
Reflection shellResolution: 2.84→3.23 Å / Num. unique obs: 2319 / CC1/2: 0.571

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Processing

Software
NameVersionClassification
PHENIX(1.19.2_4158: ???)refinement
PDB_EXTRACTdata extraction
autoPROCdata reduction
autoPROCdata scaling
PHASERphasing
RefinementMethod to determine structure: MOLECULAR REPLACEMENT / Resolution: 2.84→78.15 Å / SU ML: 0.36 / Cross valid method: FREE R-VALUE / σ(F): 1.95 / Phase error: 30.23 / Stereochemistry target values: ML
RfactorNum. reflection% reflection
Rfree0.2623 2200 4.75 %
Rwork0.2074 --
obs0.2101 46361 51.87 %
Solvent computationShrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL
Refinement stepCycle: LAST / Resolution: 2.84→78.15 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms25880 0 432 36 26348
Refine LS restraints
Refine-IDTypeDev idealNumber
X-RAY DIFFRACTIONf_bond_d0.00426779
X-RAY DIFFRACTIONf_angle_d0.88736497
X-RAY DIFFRACTIONf_dihedral_angle_d13.4449595
X-RAY DIFFRACTIONf_chiral_restr0.054204
X-RAY DIFFRACTIONf_plane_restr0.0064772
LS refinement shell
Resolution (Å)Rfactor RfreeNum. reflection RfreeRfactor RworkNum. reflection RworkRefine-ID% reflection obs (%)
2.84-2.90.565540.339987X-RAY DIFFRACTION2
2.9-2.970.3546100.3822190X-RAY DIFFRACTION4
2.97-3.050.4126170.3337314X-RAY DIFFRACTION6
3.05-3.130.3867350.3114515X-RAY DIFFRACTION10
3.13-3.220.3403440.2882928X-RAY DIFFRACTION17
3.22-3.320.3474610.26551389X-RAY DIFFRACTION26
3.32-3.440.3156950.27492104X-RAY DIFFRACTION40
3.44-3.580.35581250.24112715X-RAY DIFFRACTION51
3.58-3.740.31831590.22373178X-RAY DIFFRACTION60
3.74-3.940.26142120.20083566X-RAY DIFFRACTION68
3.94-4.190.26962180.19243973X-RAY DIFFRACTION75
4.19-4.510.24972320.17124533X-RAY DIFFRACTION85
4.51-4.960.21572270.16724984X-RAY DIFFRACTION93
4.96-5.680.25552680.21455224X-RAY DIFFRACTION99
5.68-7.160.27592460.23645266X-RAY DIFFRACTION99
7.16-78.150.22892470.20535195X-RAY DIFFRACTION97
Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

IDL112)L122)L132)L222)L232)L332)S11 (Å °)S12 (Å °)S13 (Å °)S21 (Å °)S22 (Å °)S23 (Å °)S31 (Å °)S32 (Å °)S33 (Å °)T112)T122)T132)T222)T232)T332)Origin x (Å)Origin y (Å)Origin z (Å)
10.3772-0.0162-0.08140.07640.09340.1391-0.1505-0.02450.02360.1348-0.0501-0.1873-0.17370.0961-0.34470.2887-0.2711-0.03150.1261-0.11320.388317.683618.548956.5268
20.43930.4792-0.2031.3052-0.20180.24960.0106-0.0538-0.0422-0.0203-0.0979-0.2651-0.0060.091-0.38850.0529-0.09970.0706-0.06090.16030.145913.357912.213154.503
30.03110.02450.01410.021-0.00280.04160.01130.0423-0.06940.044-0.01220.0814-0.0812-0.0952-0.0176-0.07470.4060.05770.19420.06480.2512-7.952215.725446.3661
40.604-0.11270.25540.1628-0.48111.43920.0394-0.0106-0.10470.09230.11960.16840.0332-0.19161.10780.033-0.06870.15120.0374-0.02680.12830.00995.534548.7946
50.6016-0.390.17770.3794-0.25710.31820.0652-0.0581-0.0718-0.00980.10320.0986-0.04130.00660.1049-0.0107-0.1651-0.08510.1151-0.05360.2912.980312.651938.8732
60.09080.0655-0.06620.047-0.02720.1235-0.0673-0.0276-0.0234-0.0211-0.08740.0010.0580.0582-0.2354-0.0183-0.04240.11120.2484-0.06070.19185.634215.321135.8473
72.3499-1.4296-2.82182.00851.39873.9142-0.9612-0.3423-1.43480.63750.04550.61271.4594-0.16960.45240.7361-0.2210.20790.79550.07370.9737-11.4926-10.651143.6072
83.33260.64631.39682.9992.26412.05640.0258-0.5237-0.45350.80730.61730.20320.6064-0.6137-0.51810.5493-0.06730.13440.60280.22250.8855-9.8069-10.279154.226
92.3804-0.9544-0.81362.27971.9242.90.33230.97320.06330.55040.13310.51960.9345-0.9612-0.4030.9912-0.531-0.07481.1775-0.09461.6426-18.4629-17.31943.9763
100.41010.1412-0.4092.44720.94391.79820.52720.04370.00770.5041-0.0406-0.33320.14110.0027-0.45621.42150.26720.26760.59130.02650.8577-8.5956-5.315257.6491
110.5604-0.29790.2520.72820.12161.6969-0.0087-0.10790.18550.1630.1198-0.003-0.1285-0.0430.49950.1692-0.0020.24110.2975-0.14690.14825.6715-10.443948.5546
120.1526-0.1673-0.10050.2050.1640.2069-0.1328-0.2013-0.37430.1712-0.1148-0.07540.20650.0117-0.40180.4554-0.32810.02010.44780.26540.42314.9379-17.850749.7876
131.90530.2460.02055.68360.4074.9328-0.1075-0.7059-0.31751.416-0.4446-0.56610.68081.50290.70280.69250.01990.13951.01380.26660.343212.2055-13.338760.5049
141.5693-0.60170.24363.04130.28691.6945-0.0604-0.14060.01860.31850.0623-0.29460.11030.1095-0.02810.07610.1244-0.0394-0.0548-0.01420.18314.6587-15.13848.383
150.19860.0019-0.00130.32450.03090.57720.0136-0.0391-0.11020.0391-0.04010.05940.19630.05190.336-0.09780.1058-0.0414-0.25120.2577-0.064118.18611.920840.4965
160.78790.1563-0.45940.9758-0.0190.27-0.3126-0.1043-0.18910.04370.4832-0.27080.33130.38240.04520.94650.34740.25230.8424-0.02580.385520.6381-0.67231.0738
171.6682-0.6294-0.67423.4113-0.80440.6269-0.10750.25830.0276-0.02730.07610.16570.0612-0.1104-0.20870.8511-0.01720.15370.25180.04140.23519.766210.76543.3905
183.4539-1.01260.89361.51270.46791.5242-0.22740.27190.2281-0.3795-0.0741-0.0970.22390.3147-0.04260.6310.04310.07470.22010.06070.161815.32163.748210.2726
190.3907-0.3116-0.40190.3990.0430.93610.13630.1644-0.1106-0.1808-0.06120.109-0.0019-0.0550.85140.76820.0313-0.09720.2038-0.11350.1738-3.6397-7.61320.4446
201.00770.74011.17064.05890.76724.0682-0.0525-0.24150.150.5078-0.10.7337-0.2983-0.58420.31680.08950.0260.10220.05110.00110.1692-5.30685.608918.8285
210.1821-0.0619-0.01930.21560.16810.47790.02190.02370.0381-0.11890.0623-0.046-0.10720.19250.33280.1815-0.1891-0.05090.0259-0.1507-0.10067.75911.348425.2574
220.20080.1225-0.11690.27380.03190.11360.0943-0.04090.0085-0.1480.1178-0.0182-0.05430.15250.98860.0145-0.2033-0.1130.10210.06530.13239.79151.280328.0906
230.15540.00640.25161.25220.45350.7109-0.0077-0.04190.4849-0.215-0.09260.66020.178-0.4-0.03850.6005-0.2123-0.33380.24880.05880.718-18.25062.547623.7049
240.346-0.1273-0.37290.80080.81511.01070.3592-0.53760.85720.1361-0.16520.4367-0.3368-0.1108-0.08550.6978-0.22330.32771.0704-0.77381.7246-21.793122.950525.8492
254.2487-0.90290.47544.51720.225.67280.47550.76260.0573-0.5424-0.42970.42550.3378-0.85920.03580.31080.0043-0.20640.61430.06830.6782-20.433114.555611.6221
260.61360.45090.22661.0573-1.05924.0589-0.2451-0.34920.11830.3276-0.00090.65010.223-0.52280.07280.9098-0.02410.46761.26370.30461.1211-28.263712.191729.263
275.6693-0.3459-0.69071.2692-1.97173.38970.0730.60960.09080.5744-0.3445-0.27960.6418-0.0890.28240.6920.0204-0.09960.625-0.24391.1058-28.764512.593518.2701
282.8174-0.03810.85791.98091.00073.77270.10470.6430.4286-0.1101-0.3315-0.90950.2562-0.17720.06940.95690.34280.08560.5489-0.16670.8141-12.321811.35627.1153
292.1917-0.32130.40642.0797-0.25932.4668-0.0427-0.05070.3919-0.41930.10060.165-0.92640.2681-0.15630.4495-0.0580.03530.197-0.04030.3793-7.438527.246313.8565
300.34450.20940.23910.85470.06530.7542-0.1480.0946-0.0021-0.1964-0.12280.0554-0.1170.0952-0.37870.2567-0.06530.1309-0.0794-0.0440.336712.056118.504521.7312
313.7127-0.56650.51684.0513-0.58524.01210.0948-0.012-0.3245-0.34540.07010.38460.3362-0.5636-0.09730.4105-0.129-0.06450.2096-0.07190.4561-40.3772-37.620879.425
320.0859-0.1391-0.21720.95130.24670.5250.15490.0857-0.2524-0.14780.06160.37460.1483-0.24510.54130.0242-0.165-0.26060.3223-0.12130.1869-39.7104-37.065886.2435
330.8486-0.0338-0.22361.56631.25691.8630.0670.0560.0565-0.1014-0.11020.0912-0.2593-0.24870.11090.20580.1487-0.01240.2817-0.16460.1117-27.5305-18.631595.6854
340.3701-0.07030.3030.7866-0.03850.6427-0.1312-0.13090.2129-0.1549-0.0682-0.4502-0.35210.275-0.2542-0.1142-0.0846-0.04460.2712-0.05970.1792-24.9051-28.64297.9964
351.51980.94431.95650.58751.2352.91510.3667-0.4375-0.82550.11840.6668-0.62990.26240.5082-0.64960.4247-0.04140.10541.11730.36811.27392.0668-36.986892.3752
361.7837-0.51491.37322.9598-0.63774.93280.13280.96530.4713-0.76910.0129-1.33920.39811.2355-0.17870.61190.15320.10310.9086-0.18791.1408-3.0263-38.239883.3685
370.4391-0.2775-0.23661.5488-0.12060.47450.0608-0.070.16410.0608-0.02040.11910.0068-0.0774-0.09280.8078-0.47610.38621.41090.22311.49344.6164-22.3012100.4067
383.57171.8584-1.35471.3402-1.62232.7664-0.24190.358-0.4321-0.1312-0.3196-0.17340.1234-0.14250.44660.6104-0.04090.03891.86540.08951.20277.8317-35.182299.3261
392.4391.2443-0.59294.91031.63673.04380.6516-0.31070.8398-0.4530.22380.1924-0.51050.1924-0.66820.622-0.10450.08620.89880.37371.71739.5816-35.468588.6245
405.74713.4675-0.73964.9978-2.10991.8960.48410.93691.28070.34340.1860.01320.35090.4112-0.741.18380.20830.23660.6870.00410.9153-8.9858-36.803580.658
410.24380.3598-0.82433.2486-1.75132.8887-0.15660.41720.0157-0.22960.09120.2503-0.0863-1.0395-0.13360.33510.1926-0.0010.6726-0.02510.1566-14.113-48.144994.5268
424.05151.20252.85956.19622.55063.653-0.52520.24820.3843-0.40210.1377-0.6257-0.15270.63630.1340.58350.19920.10530.33370.11210.3883-6.12-55.796590.6957
432.66470.0667-0.55273.0807-1.05213.3443-0.1059-0.06250.1296-0.37870.4493-0.58430.6180.314-0.27450.46220.1776-0.00460.4014-0.10880.7605-14.081-53.489685.2147
444.15672.43763.56692.5631.0813.9616-0.02980.1433-0.04250.13730.0866-0.2802-0.0910.2839-0.01220.3412-0.163-0.02690.4938-0.27010.3875-13.1321-54.7663101.0332
450.971-0.1689-0.540.21480.45841.0685-0.0394-0.0623-0.38890.24560.1974-0.16250.41080.09560.3722-0.00580.1498-0.0615-0.0876-0.00710.3175-31.1702-48.847998.888
460.06420.020.05560.2171-0.1940.25980.03150.03480.0282-0.0417-0.0145-0.0895-0.04470.02940.07440.9677-0.34320.51211.38860.28341.1483-23.4734-16.4335-9.203
472.69941.2387-0.55995.1491-0.32282.5787-0.0233-0.770.02190.5712-0.12410.1680.84160.16310.15490.6390.04270.24131.16360.27270.4824-14.3138-4.9934-7.2479
480.72510.4249-0.88141.21160.00681.7857-0.4143-0.1177-0.3170.27350.08540.15530.5499-0.20230.06960.45660.21690.27390.8650.30360.3826-16.7068-5.2718-14.6654
492.9193-0.4595-1.79923.30320.51481.1192-0.254-0.52970.01090.62640.1771-0.45470.16450.4517-0.08820.33260.2147-0.01910.5315-0.07240.2773.2994-2.3405-24.8064
504.88082.0033-0.93733.8992-0.38892.6917-0.3451-0.2822-0.08520.33580.4225-0.003-0.0023-0.0026-0.13920.33810.24680.03610.26560.00940.174-6.5747-4.1055-31.7297
510.5771-0.0168-0.01730.20590.03060.3024-0.1841-0.2014-0.03770.18020.13710.05550.09860.13280.06050.06280.2570.11310.2231-0.21480.1266-5.5703-4.3964-33.9185
522.90471.35471.67751.1239-0.56175.84550.27830.47040.46450.06080.87-1.1365-0.40780.4143-1.10020.7998-0.0577-0.18720.6546-0.02641.07656.346527.7868-30.6837
531.558-0.0144-1.06051.1307-0.40523.3393-0.1404-0.42740.23560.6286-0.2676-0.4893-0.27720.8875-0.29780.6116-0.1796-0.25020.8456-0.22680.8338.17222.4543-18.5114
541.94011.0117-0.01940.6824-0.33770.6839-0.01780.13440.12010.2542-0.31180.0012-0.09910.16980.15461.0193-0.49990.44871.26150.04592.222116.194724.3173-36.416
558.2109-1.7038-1.91090.35530.34485.63470.19420.14910.92830.14240.0514-1.2487-0.92681.0961-0.18720.8854-0.00730.15540.7262-0.06931.367214.412921.3961-22.32
564.9817-0.82470.95260.71880.84351.9047-0.2802-1.0884-0.57790.17820.6118-0.19131.1013-0.2696-0.24380.75260.1287-0.03650.39120.03550.3194-5.421217.6577-15.9303
571.9767-0.44780.3071.670.39850.9734-0.11960.31380.2260.14290.07860.0193-0.4768-0.10730.09080.47280.3258-0.21940.37880.03260.1421-6.873826.7204-23.9442
580.44780.3698-0.11421.16581.15621.82350.0076-0.4865-0.00610.63160.29720.0837-0.2106-0.9271-0.12580.54860.29470.02310.71820.01930.2143-16.386324.6969-17.9681
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600.11040.1236-0.40370.6751-0.16741.60150.0294-0.141-0.01640.120.03070.15290.0373-0.14670.43450.545-0.0270.310.71490.11070.3336-24.3691-0.3092-25.2266
611.00150.88710.53322.35980.0172.34620.285-0.6762-0.38420.6564-0.313-0.0380.0042-0.0933-0.01850.69620.0060.15140.62730.24210.35567.6694-57.9704-2.0825
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630.18370.41860.29651.2393-0.04152.3188-0.2675-0.301-0.10310.27540.19930.2622-0.1278-0.5373-0.2340.77930.40860.170.57810.11710.24849.3806-56.1135-8.101
640.3122-0.05710.29230.0867-0.15750.41280.10730.2018-0.15170.19240.0351-0.160.36070.20681.45110.61250.3463-0.44490.5292-0.175-0.019526.2579-50.0017-19.1411
650.369-0.8927-0.39817.40755.60076.2657-0.0541-0.2322-0.2119-0.03440.1979-0.07850.15720.1903-0.0180.9133-0.1790.28860.62840.26560.620324.7595-36.0424-26.1511
661.15160.6301-0.70081.9610.05331.1680.1299-0.0309-0.0047-0.06250.203-0.0746-0.0103-0.03480.61930.3570.00070.03840.04350.12140.25615.0735-54.66-25.306
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680.8116-1.94870.03046.01232.173.9972-0.4180.17061.0452-0.32710.3039-0.4409-1.12550.5557-0.21080.48720.0161-0.10030.48010.03990.916326.9118-26.4144-24.3563
692.12111.49691.11133.421-0.78156.5672-0.1047-0.62240.23520.51570.4736-0.2054-0.94371.2618-0.25880.6156-0.049-0.12190.5071-0.17920.707825.9401-25.052-13.2883
700.36860.08840.07470.0298-0.08591.3015-0.10170.6604-0.1694-0.19490.3961-0.6082-0.39680.5209-0.18570.975-0.587-0.03521.1043-0.01741.291932.6934-20.0036-29.4255
710.93140.3212-0.4470.1107-0.0582.73420.21060.04290.0607-0.3272-0.1809-0.2021-0.11120.39350.46360.61570.3346-0.19220.29080.11220.271323.5624-28.9293-12.4582
720.6734-0.3784-0.64550.58990.22971.81770.0788-0.04260.0878-0.01420.1043-0.0562-0.18140.0170.39660.17160.36150.0680.3791-0.2756-0.04449.0763-21.6802-16.5524
731.65140.14881.12181.4794-1.14342.5775-0.0295-0.6668-0.11540.56440.23870.3759-0.5505-0.9082-0.41670.28190.1290.04930.32850.25810.13735.4283-28.2335-6.576
740.3807-0.11830.33510.1668-0.26270.486-0.1147-0.2003-0.04540.14060.11220.069-0.0581-0.1418-0.38070.44650.4140.12631.160.27930.49041.0389-27.1059-18.3734
751.10660.25411.0541.73660.88452.319-0.2965-0.5047-0.09240.5885-0.01750.5139-0.1737-0.6540.06760.33220.15530.14560.3740.00530.3216-0.2018-45.6604-21.8521
763.3784-3.071.95682.8473-1.96051.8341-0.05590.176-0.047-0.09270.02850.3522-0.1852-0.3303-0.47310.43550.4125-0.22590.7942-0.09510.3138-1.380721.096575.8354
772.0852.21471.18822.35891.3511.90430.18260.1535-0.4240.09160.168-0.4020.20310.3615-0.38520.2432-0.1063-0.03340.7482-0.1890.322312.71899.796771.911
780.86670.5615-0.02731.01840.04232.1590.1644-0.12440.10740.2207-0.03680.03960.1991-0.29350.41160.40140.11210.04930.4554-0.05390.13447.311117.714278.4795
791.53930.3020.09871.03030.26250.5952-0.0810.0471-0.07440.0136-0.14050.424-0.031-0.3476-0.18210.02290.0508-0.1310.391-0.09260.376910.196215.124480.9615
801.025-0.00380.12760.3-0.02390.3808-0.175-0.35610.1498-0.1131-0.0006-0.0457-0.0141-0.0581-0.575-0.0283-0.15110.11770.141-0.01230.142324.544121.55491.5625
814.4133-1.49760.23820.64370.10070.25570.0125-1.10110.81560.07190.0396-0.2225-0.238-0.0207-0.39040.5162-0.09760.37851.1316-0.18581.033449.313218.657787.0738
820.16030.26420.46132.16041.96152.16850.1380.4764-0.8365-0.1217-0.0973-0.45030.13710.59470.05650.46790.33230.1921.5050.34621.116149.6336-0.582293.9797
833.565-0.7854-1.92523.1355-0.1973.71120.05460.6497-0.3806-0.9475-0.87730.31910.6933-0.61640.76780.85940.07440.09880.8352-0.43231.622244.11195.314782.6437
840.0364-0.204-0.06321.40860.40590.144-0.276-0.4448-0.72010.6778-0.06530.02940.2023-0.15180.46052.26220.38090.98321.12730.36511.624741.9049.436366.3423
850.13090.10480.17991.3486-0.0020.2647-0.087-0.19410.0861-0.23380.0583-0.16970.08080.11880.19050.4266-0.17870.3470.91690.1130.849150.827614.757988.08
861.0283-0.4195-0.17882.1294-0.28820.6539-0.2104-0.2329-0.3320.1458-0.13530.19320.37730.11320.35150.82470.07780.49961.79280.34341.180556.6145.405790.6387
871.871-1.81520.4821.9079-1.15844.13660.39850.65510.6873-0.574-0.77560.131.16120.53060.15731.1477-0.05460.17781.42060.10570.893541.145510.466676.535
881.32330.7042-1.15373.8129-1.26921.6325-0.03630.2987-0.0677-0.55550.10480.21160.2747-0.086-0.06840.17720.1838-0.00940.64580.03020.653234.5218-5.500582.7232
894.9179-2.0666-0.59855.2489-2.07072.67940.24120.284-1.00470.0297-0.1726-0.26970.2877-0.1119-0.06420.6854-0.2042-0.02770.3376-0.09270.488226.1124-5.912486.0059
901.67611.35320.07991.652-0.16360.7786-0.0271-0.0245-0.5129-0.00360.0752-0.29750.1839-0.01070.87650.1575-0.17470.23440.11580.02180.516911.27361.873594.7187
910.46440.0425-0.29230.12590.18051.1186-0.0426-0.1151-0.1834-0.0815-0.0124-0.1670.05680.50360.03190.77440.08290.58560.85990.11810.613543.5846-46.44966.6896
922.6945-0.2893-2.03770.30320.25973.33940.0790.50650.0115-0.1181-0.138-0.04440.196-0.4888-0.21171.06320.02070.18310.69820.0130.317529.8398-36.08229.3455
930.5348-0.3459-0.73592.21121.73832.67280.19670.0411-0.0180.19770.4224-0.31890.22760.9224-0.39521.48670.55440.18061.0588-0.12410.523341.3716-52.177716.79
941.4303-0.5049-0.35470.90690.29220.124-0.03690.1502-0.0165-0.3201-0.1514-0.350.1550.3887-0.71350.4668-0.07250.2620.6679-0.02180.249536.6696-40.096215.6978
951.253-0.3670.40641.4021-0.80670.50550.01380.1751-0.5372-0.9140.11040.22150.8544-0.139-0.04240.7229-0.11630.05480.23910.06440.300121.7236-54.819124.5619
965.0440.2357-1.4163.0463-0.13883.98570.1894-0.0596-0.03190.1249-0.07540.0480.18590.3833-0.06620.1620.0282-0.02760.06740.03520.14824.4024-48.736932.5144
971.3240.43630.35921.1288-0.16010.4662-0.07740.0552-0.4274-0.3320.0954-0.13560.4921-0.0467-0.02370.4751-0.1740.22650.072-0.03560.115831.9622-49.277533.2661
980.47720.00020.73540.5122-0.40061.44250.5373-0.7261-0.18660.05090.30490.3386-0.1361-0.3646-0.35231.0616-0.53950.3791.28440.17591.5748-2.2703-37.77530.9282
991.9867-0.39970.26951.87830.87633.1150.09071.0302-1.0193-0.9485-0.31761.26430.2058-0.83620.050.7116-0.0686-0.33731.189-0.16450.92550.5227-40.729815.2469
1004.16080.0534-1.44553.4436-1.60153.2739-0.2102-0.0973-0.79820.1075-0.07370.04830.32120.28750.10090.3916-0.09420.34691.05440.08171.1195-1.7284-40.590124.7617
101-0.00260.00310.01290.2922-0.89063.25840.4675-0.98620.03410.25640.82530.6414-0.1259-0.7055-1.12690.9023-0.16120.34691.55740.32171.792-5.6774-47.016129.4046
1022.03811.2183-0.66733.39880.60754.09760.2505-0.3231-0.2440.12680.2107-0.59740.24250.4985-0.32590.63890.0077-0.34280.395-0.23650.746710.4137-40.421612.5084
1032.3224-0.69040.32511.633-0.69834.9996-0.34590.0083-0.1915-0.32420.01560.3633-0.6159-0.54570.06070.27850.0259-0.09360.3894-0.01580.22239.0651-28.859125.5541
1042.1121-0.44050.29472.18550.01142.1577-0.32250.4520.1966-0.8338-0.0243-0.4669-0.433-0.08090.10370.3729-0.04620.00530.259-0.00240.180111.609-24.520819.442
1052.9869-0.3422-0.04951.6098-0.07581.25010.02790.4204-0.1244-0.0345-0.1072-0.1693-0.49770.41660.05430.3857-0.15820.10420.358-0.03880.168831.9419-30.132528.0841
1061.26540.3986-0.49011.71850.30670.3379-0.126-0.40470.1330.265-0.0225-0.3499-0.26270.2198-0.34080.4035-0.1477-0.16230.3902-0.13220.215536.9211-30.738264.2905
1072.633-0.25970.07044.1786-0.63151.31360.0086-0.31010.48040.1153-0.0584-0.3696-0.3080.5976-0.17350.1753-0.10380.05940.60580.03990.248639.3439-35.065558.1191
1081.79590.27381.46670.38490.32051.7741-0.0706-0.3315-0.38320.17220.00710.01950.0437-0.7327-0.0460.01930.0571-0.18810.34250.12450.202617.5683-36.967354.7133
1091.1683-0.07750.52824.3554-0.66350.32890.1232-0.2175-0.20950.6764-0.00610.2810.1145-0.11940.35120.3977-0.05090.13890.03370.00460.349524.5673-44.19456.3284
1100.1606-0.06940.69340.0429-0.40223.8077-0.32780.1420.1163-0.0855-0.3987-0.4080.5272-1.05560.62311.54270.3508-0.24631.1983-0.30361.10917.7964-54.885848.8051
1110.09850.10420.13140.13860.21720.3450.04580.1178-0.0854-0.05710.180.04550.01020.18520.5824-0.2045-0.2108-0.3056-0.0342-0.0817-0.136525.2679-36.27843.5028
1122.56260.04671.83571.1531-1.35582.9844-0.55580.7797-0.5426-0.4198-0.1497-0.9638-0.35730.95490.56140.8928-0.31190.41811.0028-0.18321.101715.2682-65.910244.5034
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1140.15380.20110.03910.63470.41130.3484-0.1269-0.0818-0.18350.7643-0.21440.67060.0817-0.09370.32072.29280.2868-0.43420.6823-0.23241.482126.8861-57.225968.5249
1151.3827-0.47-0.23982.9315-0.76333.87660.2018-0.865-0.17020.0229-0.4506-0.04670.99410.76380.40841.0967-0.00850.46560.86730.22080.9633.9584-68.017452.2153
1163.23011.0307-1.32413.40571.1491.68020.8060.3133-0.73970.6701-0.05440.15080.126-0.0475-0.61540.89990.122-0.00550.83870.03751.538528.6058-63.439155.7241
1170.05230.0113-0.01910.0026-0.00440.0069-0.1819-0.0088-0.3395-0.19750.10030.34080.1115-0.4080.13840.9173-0.5209-0.28492.12450.6941.614539.5839-62.495565.1299
1180.19240.3908-0.59294.77031.17463.2427-0.38820.2717-0.76380.1362-0.3801-0.54121.15170.79250.56190.71250.43570.04441.0084-0.20071.259737.1594-59.456749.7526
1193.31152.0032-1.35964.33951.32972.0381-0.480.4766-0.9560.8207-0.4618-0.72721.0747-0.20860.84690.69310.17290.2570.88950.27470.833443.3518-50.405844.2819
1200.17160.59070.38944.1061-1.13363.7813-0.03610.1614-0.0438-0.044-0.0262-0.3093-0.12120.5191-0.12180.1203-0.17110.06620.3167-0.07710.053743.5783-37.336946.6746
Refinement TLS group
IDRefine-IDRefine TLS-IDSelection details
1X-RAY DIFFRACTION1(chain A and resid 3:66)
2X-RAY DIFFRACTION2(chain A and resid 67:93)
3X-RAY DIFFRACTION3(chain A and resid 94:132)
4X-RAY DIFFRACTION4(chain A and resid 133:153)
5X-RAY DIFFRACTION5(chain A and resid 154:175)
6X-RAY DIFFRACTION6(chain A and resid 176:210)
7X-RAY DIFFRACTION7(chain A and resid 211:248)
8X-RAY DIFFRACTION8(chain A and resid 249:287)
9X-RAY DIFFRACTION9(chain A and resid 288:309)
10X-RAY DIFFRACTION10(chain A and resid 310:332)
11X-RAY DIFFRACTION11(chain A and resid 333:347)
12X-RAY DIFFRACTION12(chain A and resid 348:376)
13X-RAY DIFFRACTION13(chain A and resid 377:392)
14X-RAY DIFFRACTION14(chain A and resid 393:407)
15X-RAY DIFFRACTION15(chain A and resid 408:460)
16X-RAY DIFFRACTION16(chain B and resid 3:24)
17X-RAY DIFFRACTION17(chain B and resid 25:46)
18X-RAY DIFFRACTION18(chain B and resid 47:93)
19X-RAY DIFFRACTION19(chain B and resid 94:130)
20X-RAY DIFFRACTION20(chain B and resid 131:156)
21X-RAY DIFFRACTION21(chain B and resid 157:174)
22X-RAY DIFFRACTION22(chain B and resid 175:208)
23X-RAY DIFFRACTION23(chain B and resid 209:227)
24X-RAY DIFFRACTION24(chain B and resid 228:245)
25X-RAY DIFFRACTION25(chain B and resid 246:281)
26X-RAY DIFFRACTION26(chain B and resid 282:300)
27X-RAY DIFFRACTION27(chain B and resid 301:320)
28X-RAY DIFFRACTION28(chain B and resid 321:332)
29X-RAY DIFFRACTION29(chain B and resid 333:410)
30X-RAY DIFFRACTION30(chain B and resid 411:460)
31X-RAY DIFFRACTION31(chain C and resid 3:35)
32X-RAY DIFFRACTION32(chain C and resid 36:92)
33X-RAY DIFFRACTION33(chain C and resid 93:111)
34X-RAY DIFFRACTION34(chain C and resid 112:215)
35X-RAY DIFFRACTION35(chain C and resid 216:238)
36X-RAY DIFFRACTION36(chain C and resid 247:282)
37X-RAY DIFFRACTION37(chain C and resid 283:289)
38X-RAY DIFFRACTION38(chain C and resid 290:301)
39X-RAY DIFFRACTION39(chain C and resid 302:312)
40X-RAY DIFFRACTION40(chain C and resid 313:337)
41X-RAY DIFFRACTION41(chain C and resid 338:344)
42X-RAY DIFFRACTION42(chain C and resid 345:366)
43X-RAY DIFFRACTION43(chain C and resid 367:403)
44X-RAY DIFFRACTION44(chain C and resid 404:410)
45X-RAY DIFFRACTION45(chain C and resid 411:460)
46X-RAY DIFFRACTION46(chain D and resid 3:9)
47X-RAY DIFFRACTION47(chain D and resid 10:33)
48X-RAY DIFFRACTION48(chain D and resid 34:92)
49X-RAY DIFFRACTION49(chain D and resid 93:153)
50X-RAY DIFFRACTION50(chain D and resid 154:177)
51X-RAY DIFFRACTION51(chain D and resid 178:216)
52X-RAY DIFFRACTION52(chain D and resid 222:246)
53X-RAY DIFFRACTION53(chain D and resid 247:283)
54X-RAY DIFFRACTION54(chain D and resid 284:302)
55X-RAY DIFFRACTION55(chain D and resid 303:324)
56X-RAY DIFFRACTION56(chain D and resid 325:344)
57X-RAY DIFFRACTION57(chain D and resid 345:381)
58X-RAY DIFFRACTION58(chain D and resid 382:411)
59X-RAY DIFFRACTION59(chain D and resid 412:444)
60X-RAY DIFFRACTION60(chain D and resid 445:460)
61X-RAY DIFFRACTION61(chain E and resid 3:35)
62X-RAY DIFFRACTION62(chain E and resid 36:77)
63X-RAY DIFFRACTION63(chain E and resid 78:94)
64X-RAY DIFFRACTION64(chain E and resid 95:150)
65X-RAY DIFFRACTION65(chain E and resid 151:156)
66X-RAY DIFFRACTION66(chain E and resid 157:174)
67X-RAY DIFFRACTION67(chain E and resid 175:210)
68X-RAY DIFFRACTION68(chain E and resid 211:246)
69X-RAY DIFFRACTION69(chain E and resid 247:285)
70X-RAY DIFFRACTION70(chain E and resid 286:301)
71X-RAY DIFFRACTION71(chain E and resid 306:344)
72X-RAY DIFFRACTION72(chain E and resid 345:373)
73X-RAY DIFFRACTION73(chain E and resid 374:395)
74X-RAY DIFFRACTION74(chain E and resid 396:408)
75X-RAY DIFFRACTION75(chain E and resid 409:460)
76X-RAY DIFFRACTION76(chain F and resid 3:15)
77X-RAY DIFFRACTION77(chain F and resid 16:35)
78X-RAY DIFFRACTION78(chain F and resid 36:54)
79X-RAY DIFFRACTION79(chain F and resid 55:97)
80X-RAY DIFFRACTION80(chain F and resid 98:215)
81X-RAY DIFFRACTION81(chain F and resid 216:225)
82X-RAY DIFFRACTION83(chain F and resid 245:259)
83X-RAY DIFFRACTION84(chain F and resid 260:268)
84X-RAY DIFFRACTION85(chain F and resid 269:290)
85X-RAY DIFFRACTION86(chain F and resid 291:308)
86X-RAY DIFFRACTION87(chain F and resid 309:334)
87X-RAY DIFFRACTION88(chain F and resid 335:389)
88X-RAY DIFFRACTION89(chain F and resid 390:422)
89X-RAY DIFFRACTION90(chain F and resid 423:460)
90X-RAY DIFFRACTION91(chain G and resid 3:24)
91X-RAY DIFFRACTION92(chain G and resid 25:44)
92X-RAY DIFFRACTION93(chain G and resid 45:55)
93X-RAY DIFFRACTION94(chain G and resid 56:91)
94X-RAY DIFFRACTION95(chain G and resid 92:153)
95X-RAY DIFFRACTION96(chain G and resid 154:170)
96X-RAY DIFFRACTION97(chain G and resid 171:215)
97X-RAY DIFFRACTION98(chain G and resid 216:246)
98X-RAY DIFFRACTION99(chain G and resid 247:272)
99X-RAY DIFFRACTION100(chain G and resid 273:281)
100X-RAY DIFFRACTION101(chain G and resid 282:322)
101X-RAY DIFFRACTION102(chain G and resid 323:332)
102X-RAY DIFFRACTION103(chain G and resid 333:356)
103X-RAY DIFFRACTION104(chain G and resid 357:411)
104X-RAY DIFFRACTION105(chain G and resid 412:460)
105X-RAY DIFFRACTION106(chain H and resid 3:56)
106X-RAY DIFFRACTION107(chain H and resid 57:83)
107X-RAY DIFFRACTION108(chain H and resid 84:132)
108X-RAY DIFFRACTION109(chain H and resid 133:148)
109X-RAY DIFFRACTION110(chain H and resid 149:155)
110X-RAY DIFFRACTION111(chain H and resid 156:213)
111X-RAY DIFFRACTION112(chain H and resid 214:249)
112X-RAY DIFFRACTION113(chain H and resid 250:315)
113X-RAY DIFFRACTION114(chain H and resid 316:337)
114X-RAY DIFFRACTION115(chain H and resid 338:363)
115X-RAY DIFFRACTION116(chain H and resid 364:380)
116X-RAY DIFFRACTION117(chain H and resid 381:396)
117X-RAY DIFFRACTION118(chain H and resid 397:419)
118X-RAY DIFFRACTION119(chain H and resid 420:438)
119X-RAY DIFFRACTION120(chain H and resid 439:460)

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