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Yorodumi- PDB-9dvh: A1 Tei + D-Hpg: Adenylation Domain 1 Core Construct from Teicopla... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 9dvh | |||||||||
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| Title | A1 Tei + D-Hpg: Adenylation Domain 1 Core Construct from Teicoplanin Biosynthesis with D-4-Hydroxyphenylglycine | |||||||||
Components |
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Keywords | LIGASE / AMP-binding enzyme / NRPS / Adenylation domain | |||||||||
| Function / homology | Function and homology informationsiderophore biosynthetic process / amino acid activation for nonribosomal peptide biosynthetic process / secondary metabolite biosynthetic process / lipid biosynthetic process / catalytic activity / phosphopantetheine binding / cytosol Similarity search - Function | |||||||||
| Biological species | Actinoplanes teichomyceticus (bacteria) | |||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.656 Å | |||||||||
Authors | Hansen, M.H. / Cryle, M.J. / Ratnayake, M.S. | |||||||||
| Funding support | Australia, 2items
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Citation | Journal: Biochemistry / Year: 2025Title: Teicoplanin Nonribosomal Peptide Synthetase Is Unable to Incorporate Alpha-Ketoacid Building Blocks. Authors: Ratnayake, M.S. / Jian, X. / Tailhades, J. / Challis, G.L. / Hansen, M.H. / Lewandowski, J.R. / Cryle, M.J. | |||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 9dvh.cif.gz | 636.8 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb9dvh.ent.gz | 438.5 KB | Display | PDB format |
| PDBx/mmJSON format | 9dvh.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 9dvh_validation.pdf.gz | 1.4 MB | Display | wwPDB validaton report |
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| Full document | 9dvh_full_validation.pdf.gz | 1.4 MB | Display | |
| Data in XML | 9dvh_validation.xml.gz | 47 KB | Display | |
| Data in CIF | 9dvh_validation.cif.gz | 65.7 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dv/9dvh ftp://data.pdbj.org/pub/pdb/validation_reports/dv/9dvh | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 1amuS S: Starting model for refinement |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Links
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Assembly
| Deposited unit | ![]()
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| 2 | ![]()
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| Unit cell |
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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Movie
Controller
Components
About Yorodumi



Actinoplanes teichomyceticus (bacteria)
X-RAY DIFFRACTION
Australia, 2items
Citation
PDBj





