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- PDB-8uut: Structure of Serratia entomophila antifeeding prophage Fibre foot... -
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Open data
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Basic information
Entry | Database: PDB / ID: 8uut | ||||||
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Title | Structure of Serratia entomophila antifeeding prophage Fibre foot domain (Afp13) | ||||||
![]() | Anti-feeding prophage Fibre | ||||||
![]() | STRUCTURAL PROTEIN / Anti-feeding prophage / Fibre foot / Cell binding | ||||||
Function / homology | Attachment protein shaft domain superfamily / virion attachment to host cell / Afp13![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Young, P.G. / Hurst, M.R.H. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Structure of Serratia entomophila antifeeding prophage Fibre foot domain (Afp13) Authors: Young, P.G. / Hurst, M.R.H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 188.3 KB | Display | ![]() |
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PDB format | ![]() | 120.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 449.6 KB | Display | ![]() |
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Full document | ![]() | 452.8 KB | Display | |
Data in XML | ![]() | 37 KB | Display | |
Data in CIF | ![]() | 49.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8uusC C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 16351.297 Da / Num. of mol.: 6 / Fragment: foot domain Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Water | ChemComp-HOH / | Has protein modification | N | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.92 Å3/Da / Density % sol: 35.81 % / Description: Tear drop |
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Crystal grow | Temperature: 291 K / Method: vapor diffusion, hanging drop / pH: 6.5 / Details: 1.6 M Tri sodium citrate |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 210r / Detector: CCD / Date: Nov 15, 2022 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.95372 Å / Relative weight: 1 |
Reflection | Resolution: 1.83→45.45 Å / Num. obs: 64474 / % possible obs: 97.4 % / Redundancy: 43 % / Biso Wilson estimate: 20.51 Å2 / CC1/2: 0.996 / Rpim(I) all: 0.073 / Net I/σ(I): 9.8 |
Reflection shell | Resolution: 1.83→1.87 Å / Redundancy: 42.5 % / Mean I/σ(I) obs: 1.8 / Num. unique obs: 3940 / CC1/2: 0.742 / Rpim(I) all: 0.622 / % possible all: 96.3 |
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Processing
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Refinement | Method to determine structure: ![]() Stereochemistry target values: GeoStd + Monomer Library + CDL v1.2
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.11 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 24.4 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.83→45.45 Å
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Refine LS restraints |
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LS refinement shell |
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