[English] 日本語
Yorodumi- PDB-8uky: Crystal structure of BAK in complex with inhibiting antibody 14G6 -
+
Open data
-
Basic information
| Entry | Database: PDB / ID: 8uky | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Title | Crystal structure of BAK in complex with inhibiting antibody 14G6 | |||||||||
Components |
| |||||||||
Keywords | APOPTOSIS/INHIBITOR / BAK / APOPTOSIS-INHIBITOR complex / BCL2 / antibody | |||||||||
| Function / homology | Function and homology informationActivation and oligomerization of BAK protein / BAK complex / BH domain binding / endocrine pancreas development / Release of apoptotic factors from the mitochondria / establishment or maintenance of transmembrane electrochemical gradient / positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway / negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway / endoplasmic reticulum calcium ion homeostasis / regulation of mitochondrial membrane permeability ...Activation and oligomerization of BAK protein / BAK complex / BH domain binding / endocrine pancreas development / Release of apoptotic factors from the mitochondria / establishment or maintenance of transmembrane electrochemical gradient / positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway / negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway / endoplasmic reticulum calcium ion homeostasis / regulation of mitochondrial membrane permeability / response to UV-C / Bcl-2 family protein complex / negative regulation of release of cytochrome c from mitochondria / porin activity / positive regulation of IRE1-mediated unfolded protein response / pore complex / positive regulation of release of cytochrome c from mitochondria / positive regulation of proteolysis / animal organ regeneration / extrinsic apoptotic signaling pathway in absence of ligand / intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress / cellular response to unfolded protein / Pyroptosis / release of cytochrome c from mitochondria / intrinsic apoptotic signaling pathway / heat shock protein binding / apoptotic signaling pathway / regulation of mitochondrial membrane potential / response to hydrogen peroxide / intrinsic apoptotic signaling pathway in response to DNA damage / cellular response to mechanical stimulus / positive regulation of protein-containing complex assembly / cellular response to UV / protein-folding chaperone binding / channel activity / response to ethanol / transmembrane transporter binding / mitochondrial outer membrane / response to xenobiotic stimulus / positive regulation of apoptotic process / negative regulation of cell population proliferation / protein heterodimerization activity / negative regulation of gene expression / apoptotic process / protein-containing complex binding / endoplasmic reticulum / protein homodimerization activity / mitochondrion / metal ion binding / identical protein binding / cytosol Similarity search - Function | |||||||||
| Biological species | Homo sapiens (human) | |||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 2.398 Å | |||||||||
Authors | Miller, M.S. / Czabotar, P.E. | |||||||||
| Funding support | Australia, United States, 2items
| |||||||||
Citation | Journal: Cell Death Differ. / Year: 2024Title: A novel inhibitory BAK antibody enables assessment of non-activated BAK in cancer cells. Authors: Subas Satish, H.P. / Iyer, S. / Shi, M.X. / Wong, A.W. / Fischer, K.C. / Wardak, A.Z. / Lio, D. / Brouwer, J.M. / Uren, R.T. / Czabotar, P.E. / Miller, M.S. / Kluck, R.M. | |||||||||
| History |
|
-
Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
|---|
-
Downloads & links
-
Download
| PDBx/mmCIF format | 8uky.cif.gz | 472.1 KB | Display | PDBx/mmCIF format |
|---|---|---|---|---|
| PDB format | pdb8uky.ent.gz | 388 KB | Display | PDB format |
| PDBx/mmJSON format | 8uky.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/uk/8uky ftp://data.pdbj.org/pub/pdb/validation_reports/uk/8uky | HTTPS FTP |
|---|
-Related structure data
| Related structure data | ![]() 2yv6S ![]() 5w5zS S: Starting model for refinement |
|---|---|
| Similar structure data | Similarity search - Function & homology F&H Search |
-
Links
-
Assembly
| Deposited unit | ![]()
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ![]()
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 2 | ![]()
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Unit cell |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
|
Movie
Controller
Components
About Yorodumi



Homo sapiens (human)
X-RAY DIFFRACTION
Australia,
United States, 2items
Citation

PDBj












