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Yorodumi- PDB-8uky: Crystal structure of BAK in complex with inhibiting antibody 14G6 -
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Open data
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Basic information
| Entry | Database: PDB / ID: 8uky | |||||||||
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| Title | Crystal structure of BAK in complex with inhibiting antibody 14G6 | |||||||||
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Keywords | APOPTOSIS/INHIBITOR / BAK / APOPTOSIS-INHIBITOR complex / BCL2 / antibody | |||||||||
| Function / homology | Function and homology informationActivation and oligomerization of BAK protein / BH domain binding / B cell negative selection / BAK complex / negative regulation of endoplasmic reticulum calcium ion concentration / response to fungus / response to mycotoxin / limb morphogenesis / Release of apoptotic factors from the mitochondria / apoptotic process involved in blood vessel morphogenesis ...Activation and oligomerization of BAK protein / BH domain binding / B cell negative selection / BAK complex / negative regulation of endoplasmic reticulum calcium ion concentration / response to fungus / response to mycotoxin / limb morphogenesis / Release of apoptotic factors from the mitochondria / apoptotic process involved in blood vessel morphogenesis / post-embryonic camera-type eye morphogenesis / endocrine pancreas development / establishment or maintenance of transmembrane electrochemical gradient / B cell apoptotic process / negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway / positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway / endoplasmic reticulum calcium ion homeostasis / regulation of mitochondrial membrane permeability / calcium ion transport into cytosol / fibroblast apoptotic process / response to UV-C / mitochondrial fusion / Bcl-2 family protein complex / myeloid cell homeostasis / porin activity / thymocyte apoptotic process / negative regulation of release of cytochrome c from mitochondria / pore complex / positive regulation of IRE1-mediated unfolded protein response / positive regulation of release of cytochrome c from mitochondria / vagina development / B cell homeostasis / positive regulation of calcium ion transport into cytosol / positive regulation of proteolysis / intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress / blood vessel remodeling / animal organ regeneration / cellular response to unfolded protein / Pyroptosis / heat shock protein binding / extrinsic apoptotic signaling pathway in absence of ligand / intrinsic apoptotic signaling pathway / release of cytochrome c from mitochondria / epithelial cell proliferation / response to gamma radiation / regulation of mitochondrial membrane potential / apoptotic signaling pathway / positive regulation of protein-containing complex assembly / establishment of localization in cell / response to hydrogen peroxide / cellular response to mechanical stimulus / intrinsic apoptotic signaling pathway in response to DNA damage / cellular response to UV / protein-folding chaperone binding / channel activity / response to ethanol / transmembrane transporter binding / mitochondrial outer membrane / regulation of cell cycle / positive regulation of apoptotic process / response to xenobiotic stimulus / protein heterodimerization activity / negative regulation of cell population proliferation / negative regulation of gene expression / apoptotic process / protein-containing complex binding / endoplasmic reticulum / protein homodimerization activity / mitochondrion / metal ion binding / identical protein binding / cytosol Similarity search - Function | |||||||||
| Biological species | Homo sapiens (human) | |||||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 2.398 Å | |||||||||
Authors | Miller, M.S. / Czabotar, P.E. | |||||||||
| Funding support | Australia, United States, 2items
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Citation | Journal: Cell Death Differ. / Year: 2024Title: A novel inhibitory BAK antibody enables assessment of non-activated BAK in cancer cells. Authors: Subas Satish, H.P. / Iyer, S. / Shi, M.X. / Wong, A.W. / Fischer, K.C. / Wardak, A.Z. / Lio, D. / Brouwer, J.M. / Uren, R.T. / Czabotar, P.E. / Miller, M.S. / Kluck, R.M. | |||||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 8uky.cif.gz | 472.1 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb8uky.ent.gz | 388 KB | Display | PDB format |
| PDBx/mmJSON format | 8uky.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 8uky_validation.pdf.gz | 530.7 KB | Display | wwPDB validaton report |
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| Full document | 8uky_full_validation.pdf.gz | 541.1 KB | Display | |
| Data in XML | 8uky_validation.xml.gz | 44.4 KB | Display | |
| Data in CIF | 8uky_validation.cif.gz | 61.2 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/uk/8uky ftp://data.pdbj.org/pub/pdb/validation_reports/uk/8uky | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 2yv6S ![]() 5w5zS S: Starting model for refinement |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments:
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About Yorodumi



Homo sapiens (human)
X-RAY DIFFRACTION
Australia,
United States, 2items
Citation

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