登録情報 | データベース: PDB / ID: 8t59 |
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タイトル | Crystal structure of Para.09 bound to TREM2 |
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要素 | - Para.09 heavy chain
- Para.09 light chain
- Triggering receptor expressed on myeloid cells 2
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キーワード | IMMUNE SYSTEM/PEPTIDE BINDING PROTEIN / Antibody / fab / complex / antigen / PEPTIDE BINDING PROTEIN / IMMUNE SYSTEM-PEPTIDE BINDING PROTEIN complex |
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機能・相同性 | 機能・相同性情報
positive regulation of high-density lipoprotein particle clearance / regulation of toll-like receptor 6 signaling pathway / positive regulation of complement activation, classical pathway / detection of lipoteichoic acid / regulation of macrophage inflammatory protein 1 alpha production / regulation of hippocampal neuron apoptotic process / regulation of plasma membrane bounded cell projection organization / positive regulation of inward rectifier potassium channel activity / positive regulation of C-C chemokine receptor CCR7 signaling pathway / positive regulation of CAMKK-AMPK signaling cascade ...positive regulation of high-density lipoprotein particle clearance / regulation of toll-like receptor 6 signaling pathway / positive regulation of complement activation, classical pathway / detection of lipoteichoic acid / regulation of macrophage inflammatory protein 1 alpha production / regulation of hippocampal neuron apoptotic process / regulation of plasma membrane bounded cell projection organization / positive regulation of inward rectifier potassium channel activity / positive regulation of C-C chemokine receptor CCR7 signaling pathway / positive regulation of CAMKK-AMPK signaling cascade / excitatory synapse pruning / positive regulation of CD40 signaling pathway / negative regulation of cell activation / detection of peptidoglycan / positive regulation of macrophage fusion / import into cell / sulfatide binding / positive regulation of engulfment of apoptotic cell / negative regulation of macrophage colony-stimulating factor signaling pathway / regulation of intracellular signal transduction / positive regulation of antigen processing and presentation of peptide antigen via MHC class II / negative regulation of fat cell proliferation / lipoteichoic acid binding / positive regulation of establishment of protein localization / positive regulation of synapse pruning / microglial cell activation involved in immune response / negative regulation of toll-like receptor 2 signaling pathway / negative regulation of astrocyte activation / apolipoprotein A-I binding / respiratory burst after phagocytosis / positive regulation of low-density lipoprotein particle clearance / positive regulation of microglial cell migration / negative regulation of autophagic cell death / Other semaphorin interactions / detection of lipopolysaccharide / CXCL12-activated CXCR4 signaling pathway / negative regulation of p38MAPK cascade / high-density lipoprotein particle binding / very-low-density lipoprotein particle binding / negative regulation of neuroinflammatory response / negative regulation of toll-like receptor 4 signaling pathway / cellular response to oxidised low-density lipoprotein particle stimulus / negative regulation of glial cell apoptotic process / regulation of resting membrane potential / microglial cell proliferation / negative regulation of NLRP3 inflammasome complex assembly / dendritic cell differentiation / complement-mediated synapse pruning / regulation of TOR signaling / low-density lipoprotein particle binding / positive regulation of microglial cell activation / amyloid-beta clearance by cellular catabolic process / regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway / positive regulation of phagocytosis, engulfment / phagocytosis, recognition / positive regulation of chemotaxis / cellular response to peptidoglycan / peptidoglycan binding / positive regulation of proteasomal protein catabolic process / positive regulation of amyloid-beta clearance / kinase activator activity / phosphatidylethanolamine binding / positive regulation of osteoclast differentiation / negative regulation of amyloid fibril formation / cellular response to lipid / positive regulation of kinase activity / apoptotic cell clearance / regulation of interleukin-6 production / dendritic spine maintenance / negative regulation of interleukin-1 beta production / negative regulation of sequestering of triglyceride / phagocytosis, engulfment / regulation of innate immune response / positive regulation of ATP biosynthetic process / pyroptotic inflammatory response / phosphatidylserine binding / negative regulation of cholesterol storage / regulation of cytokine production involved in inflammatory response / plasma membrane raft / lipid homeostasis / cellular response to lipoteichoic acid / lipoprotein particle binding / apolipoprotein binding / humoral immune response / positive regulation of interleukin-10 production / social behavior / regulation of lipid metabolic process / negative regulation of tumor necrosis factor production / negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction / positive regulation of TOR signaling / positive regulation of cholesterol efflux / response to axon injury / negative regulation of cytokine production involved in inflammatory response / negative regulation of canonical NF-kappaB signal transduction / positive regulation of phagocytosis / regulation of peptidyl-tyrosine phosphorylation / negative regulation of inflammatory response to antigenic stimulus / positive regulation of calcium-mediated signaling / negative regulation of autophagy / osteoclast differentiation類似検索 - 分子機能 : / Immunoglobulin V-set domain / Immunoglobulin V-set domain / Immunoglobulin-like domain superfamily / Immunoglobulin-like fold類似検索 - ドメイン・相同性 DI(HYDROXYETHYL)ETHER / Triggering receptor expressed on myeloid cells 2類似検索 - 構成要素 |
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生物種 | synthetic construct (人工物) Homo sapiens (ヒト) |
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手法 | X線回折 / シンクロトロン / 分子置換 / 解像度: 2 Å |
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データ登録者 | Wallweber, H. / Hsu, P.L. |
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資金援助 | 米国, 1件 組織 | 認可番号 | 国 |
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Other private | | 米国 |
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引用 | ジャーナル: Nat Commun / 年: 2024 タイトル: Rapid affinity optimization of an anti-TREM2 clinical lead antibody by cross-lineage immune repertoire mining. 著者: Hsiao, Y.C. / Wallweber, H.A. / Alberstein, R.G. / Lin, Z. / Du, C. / Etxeberria, A. / Aung, T. / Shang, Y. / Seshasayee, D. / Seeger, F. / Watkins, A.M. / Hansen, D.V. / Bohlen, C.J. / Hsu, P.L. / Hotzel, I. |
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履歴 | 登録 | 2023年6月12日 | 登録サイト: RCSB / 処理サイト: RCSB |
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改定 1.0 | 2024年7月31日 | Provider: repository / タイプ: Initial release |
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改定 1.1 | 2024年10月9日 | Group: Database references / Structure summary カテゴリ: citation / citation_author ...citation / citation_author / pdbx_entry_details / pdbx_modification_feature Item: _citation.country / _citation.journal_abbrev ..._citation.country / _citation.journal_abbrev / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.journal_volume / _citation.page_first / _citation.page_last / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year / _citation_author.identifier_ORCID / _citation_author.name / _pdbx_entry_details.has_protein_modification |
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