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Yorodumi- PDB-8s8o: Solution Structure of cAMP-dependent Protein Kinase RII-alpha Sub... -
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-Basic information
Entry | Database: PDB / ID: 8s8o | ||||||
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Title | Solution Structure of cAMP-dependent Protein Kinase RII-alpha Subunit Dimerization and Docking Domain Complex with Microtubule Associated Protein 2c (84-111) | ||||||
Components |
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Keywords | PROTEIN BINDING / AKAP / PKA / MAP2c / IDP / protein-protein complex / 4-helix bundle / microtubule | ||||||
Function / homology | Function and homology information ROBO receptors bind AKAP5 / PKA activation in glucagon signalling / negative regulation of cAMP/PKA signal transduction / cAMP-dependent protein kinase regulator activity / nucleotide-activated protein kinase complex / Hedgehog 'off' state / cAMP-dependent protein kinase inhibitor activity / CREB1 phosphorylation through the activation of Adenylate Cyclase / PKA activation / ciliary base ...ROBO receptors bind AKAP5 / PKA activation in glucagon signalling / negative regulation of cAMP/PKA signal transduction / cAMP-dependent protein kinase regulator activity / nucleotide-activated protein kinase complex / Hedgehog 'off' state / cAMP-dependent protein kinase inhibitor activity / CREB1 phosphorylation through the activation of Adenylate Cyclase / PKA activation / ciliary base / cAMP-dependent protein kinase complex / plasma membrane raft / protein kinase A catalytic subunit binding / DARPP-32 events / cAMP binding / FCGR3A-mediated IL10 synthesis / regulation of protein phosphorylation / Vasopressin regulates renal water homeostasis via Aquaporins / Glucagon-like Peptide-1 (GLP1) regulates insulin secretion / ADORA2B mediated anti-inflammatory cytokines production / GPER1 signaling / Factors involved in megakaryocyte development and platelet production / intracellular signal transduction / protein domain specific binding / focal adhesion / centrosome / ubiquitin protein ligase binding / protein-containing complex / extracellular exosome / membrane / plasma membrane / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) Rattus norvegicus (Norway rat) | ||||||
Method | SOLUTION NMR / molecular dynamics / simulated annealing | ||||||
Authors | Bartosik, V. / Lanikova, A. / Janackova, Z. / Padrta, P. / Zidek, L. | ||||||
Funding support | Czech Republic, 1items
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Citation | Journal: J.Biol.Chem. / Year: 2024 Title: Structural basis of binding the unique N-terminal domain of microtubule-associated protein 2c to proteins regulating kinases of signaling pathways. Authors: Bartosik, V. / Plucarova, J. / Lanikova, A. / Janackova, Z. / Padrta, P. / Jansen, S. / Varecka, V. / Gruber, T. / Feller, S.M. / Zidek, L. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 8s8o.cif.gz | 794.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb8s8o.ent.gz | 668.2 KB | Display | PDB format |
PDBx/mmJSON format | 8s8o.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 8s8o_validation.pdf.gz | 569.5 KB | Display | wwPDB validaton report |
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Full document | 8s8o_full_validation.pdf.gz | 978.2 KB | Display | |
Data in XML | 8s8o_validation.xml.gz | 50.3 KB | Display | |
Data in CIF | 8s8o_validation.cif.gz | 86 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/s8/8s8o ftp://data.pdbj.org/pub/pdb/validation_reports/s8/8s8o | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homologyF&H Search |
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Other databases |
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-Links
-Assembly
Deposited unit |
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NMR ensembles |
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-Components
#1: Protein | Mass: 5789.617 Da / Num. of mol.: 2 Fragment: N-terminal docking and dimerization domain, residues 1-52 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: PRKAR2A, PKR2, PRKAR2 / Plasmid: pETM11 / Production host: Escherichia coli BL21(DE3) (bacteria) / Variant (production host): RIPL / References: UniProt: P13861 #2: Protein/peptide | | Mass: 3015.349 Da / Num. of mol.: 1 / Fragment: N-terminal PKA binding region, residues 80-120 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Rattus norvegicus (Norway rat) / Gene: Map2, Mtap2 / Plasmid: pETM11 / Production host: Escherichia coli BL21(DE3) (bacteria) / Variant (production host): RIPL / References: UniProt: P15146 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
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