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Yorodumi- PDB-8rxn: REFINEMENT OF RUBREDOXIN FROM DESULFOVIBRIO VULGARIS AT 1.0 ANGST... -
+Open data
-Basic information
Entry | Database: PDB / ID: 8rxn | ||||||
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Title | REFINEMENT OF RUBREDOXIN FROM DESULFOVIBRIO VULGARIS AT 1.0 ANGSTROMS WITH AND WITHOUT RESTRAINTS | ||||||
Components | RUBREDOXIN | ||||||
Keywords | ELECTRON TRANSPORT(IRON) | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Desulfovibrio vulgaris (bacteria) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1 Å | ||||||
Authors | Dauter, Z. / Sieker, L. / Wilson, K. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.B / Year: 1992 Title: Refinement of rubredoxin from Desulfovibrio vulgaris at 1.0 A with and without restraints. Authors: Dauter, Z. / Sieker, L.C. / Wilson, K.S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 8rxn.cif.gz | 23.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb8rxn.ent.gz | 15 KB | Display | PDB format |
PDBx/mmJSON format | 8rxn.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/rx/8rxn ftp://data.pdbj.org/pub/pdb/validation_reports/rx/8rxn | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 5578.174 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Desulfovibrio vulgaris (bacteria) / References: UniProt: P00269 |
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#2: Chemical | ChemComp-FE / |
#3: Chemical | ChemComp-SO4 / |
#4: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 1.72 Å3/Da / Density % sol: 28.47 % | ||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 4 / Method: unknown | ||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | *PLUS Highest resolution: 1 Å / Lowest resolution: 2.5 Å / Num. obs: 18545 / Num. measured all: 59492 / Rmerge(I) obs: 0.058 / Biso Wilson estimate: 5.9 Å2 |
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-Processing
Software | Name: PROLSQ / Classification: refinement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Rfactor obs: 0.147 / Highest resolution: 1 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1 Å
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Refine LS restraints |
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Software | *PLUS Name: PROLSQ / Classification: refinement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 1 Å / Lowest resolution: 10 Å / Num. reflection obs: 18532 / Rfactor obs: 0.147 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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