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- PDB-8otz: 48-nm repeat of the native axonemal doublet microtubule from bovi... -

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基本情報

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データベース: PDB / ID: 8otz
タイトル48-nm repeat of the native axonemal doublet microtubule from bovine sperm
要素
  • (Cilia- and flagella-associated protein ...) x 11
  • (EF-hand domain-containing ...) x 4
  • (Outer dense fiber of sperm tails ...) x 3
  • (Piercer of microtubule wall ...) x 2
  • (Stabilizer of axonemal microtubules ...) x 2
  • (Testis expressed ...) x 2
  • (Testis-expressed ...) x 2
  • (Uncharacterized protein ...) x 4
  • ATP6V1F neighbor
  • CFAP97 domain containing 1
  • Chromosome 13 C20orf85 homolog
  • Chromosome 19 C17orf98 homolog
  • Chromosome 20 C5orf49 homolog
  • Chromosome 7 open reading frame 31
  • Cilia and flagella associated protein 77
  • Cilia- and flagella- associated protein 210
  • Coiled-coil domain-containing protein 105
  • Dual specificity phosphatase 21
  • EF-hand calcium-binding domain-containing protein 3
  • Enkurin
  • Family with sequence similarity 166 member A
  • Meiosis-specific nuclear structural protein 1
  • Nucleoside diphosphate kinase 7
  • Parkin coregulated gene protein
  • Protein FAM166C
  • Protein Flattop
  • Protein phosphatase 1 regulatory subunit 32
  • RIB43A-like with coiled-coils protein 2
  • Sperm acrosome associated 9
  • Sperm-associated antigen 8
  • Spermatid-specific manchette-related protein 1
  • Spermatogenesis-associated protein 48
  • TEPP protein
  • Tektin bundle interacting protein 1
  • Tektin-1
  • Tektin-2
  • Tektin-3
  • Tektin-4
  • Tektin-5
  • Testis specific serine kinase 6
  • Theg spermatid protein like
  • Tubulin alpha-3 chain
  • Tubulin beta-4B chain
  • UPF0602 protein C4orf47 homolog
キーワードSTRUCTURAL PROTEIN / microtubule / cilia / sperm / axoneme
機能・相同性
機能・相同性情報


sperm flagellum assembly / outer acrosomal membrane / regulation of brood size / establishment of left/right asymmetry / manchette assembly / axonemal B tubule inner sheath / axonemal A tubule inner sheath / protein polyglutamylation / positive regulation of feeding behavior / Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane ...sperm flagellum assembly / outer acrosomal membrane / regulation of brood size / establishment of left/right asymmetry / manchette assembly / axonemal B tubule inner sheath / axonemal A tubule inner sheath / protein polyglutamylation / positive regulation of feeding behavior / Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane / Cilium Assembly / Intraflagellar transport / Carboxyterminal post-translational modifications of tubulin / Sealing of the nuclear envelope (NE) by ESCRT-III / Kinesins / Resolution of Sister Chromatid Cohesion / Mitotic Prometaphase / EML4 and NUDC in mitotic spindle formation / sperm axoneme assembly / cilium-dependent cell motility / COPI-dependent Golgi-to-ER retrograde traffic / RHO GTPases activate IQGAPs / COPI-independent Golgi-to-ER retrograde traffic / COPI-mediated anterograde transport / MAP kinase tyrosine/serine/threonine phosphatase activity / RHO GTPases Activate Formins / regulation of cilium beat frequency involved in ciliary motility / cilium movement involved in cell motility / 転移酵素; リンを含む基を移すもの / acrosomal membrane / MHC class II antigen presentation / ciliary transition zone / cilium movement / HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand / sperm DNA condensation / axoneme assembly / axonemal microtubule / Aggrephagy / cilium organization / gamma-tubulin ring complex / The role of GTSE1 in G2/M progression after G2 checkpoint / flagellated sperm motility / Separation of Sister Chromatids / Loss of Nlp from mitotic centrosomes / Recruitment of mitotic centrosome proteins and complexes / Loss of proteins required for interphase microtubule organization from the centrosome / Anchoring of the basal body to the plasma membrane / AURKA Activation by TPX2 / Recruitment of NuMA to mitotic centrosomes / manchette / nucleotide-activated protein kinase complex / Regulation of PLK1 Activity at G2/M Transition / Hedgehog 'off' state / CTP biosynthetic process / UTP biosynthetic process / motile cilium / positive regulation of cell motility / negative regulation of TOR signaling / determination of left/right symmetry / GTP biosynthetic process / Neutrophil degranulation / microtubule organizing center / regulation of neuron projection development / ciliary base / nucleoside diphosphate kinase activity / myosin phosphatase activity / beta-tubulin binding / axoneme / centriolar satellite / spermatid development / mitotic cytokinesis / alpha-tubulin binding / cilium assembly / single fertilization / cellular response to UV-C / sperm flagellum / phosphatase binding / cellular response to glucose starvation / dephosphorylation / sperm midpiece / Hsp70 protein binding / centriole / 3'-5' exonuclease activity / mitotic spindle organization / acrosomal vesicle / ciliary basal body / meiotic cell cycle / protein tyrosine phosphatase activity / cell projection / G protein-coupled receptor binding / 加水分解酵素; 酸無水物に作用; GTPに作用・細胞または細胞小器官の運動に関与 / Hsp90 protein binding / protein localization / structural constituent of cytoskeleton / mitotic spindle / cilium / spindle pole / SH3 domain binding / microtubule cytoskeleton organization / spindle
類似検索 - 分子機能
Protein of unknown function DUF4542 / Uncharacterized protein C1orf100 / Sperm microtubule associated protein 1 / Family of unknown function (DUF5530) / Testicular haploid expressed repeat / Uncharacterised protein family C20orf85 / Protein of unknown function DUF4562 / Spermatid-specific manchette-related protein 1 / Testis-expressed protein 33 / Protein of unknown function DUF4586 ...Protein of unknown function DUF4542 / Uncharacterized protein C1orf100 / Sperm microtubule associated protein 1 / Family of unknown function (DUF5530) / Testicular haploid expressed repeat / Uncharacterised protein family C20orf85 / Protein of unknown function DUF4562 / Spermatid-specific manchette-related protein 1 / Testis-expressed protein 33 / Protein of unknown function DUF4586 / Testis-expressed sequence 37 protein / Hemingway/CFA97 / CFAP97 domain-containing protein 1/2 / Testicular haploid expressed gene protein-like / Testis-specific serine/threonine-protein kinase 6, catalytic domain / C10orf82-like / Hemingway/CFA97 / Testicular haploid expressed repeat / Normal lung function maintenance, Low in Lung Cancer 1 protein / Domain of unknown function (DUF4562) / Spermatid-specific manchette-related protein 1 / TSC21 family / Cilia-and flagella-associated protein 96 / Testis-expressed sequence 33 protein family / Repeats in THEG (testicular haploid expressed gene) and several fly proteins. / Protein phosphatase 1 regulatory subunit 32 / Testis, prostate and placenta-expressed protein / Testis-expressed protein 49 / Protein phosphatase 1 regulatory subunit 32 / Protein of unknown function DUF1143 / Atypical dual specificity phosphatase, subfamily B / Protein of unknown function DUF4541 / Protein of unknown function DUF4513 / Cilia- and flagella-associated protein 68 / Sperm-associated microtubule inner protein 10 / Cilia and flagella associated protein 90 / Sperm-tail PG-rich repeat / DJBP, EF-hand domain / Tektin bundle interacting protein 1 / Coiled-coil domain-containing protein 105 / Sperm-tail PG-rich repeat / EF-hand domain / Tektin bundle interacting protein 1 / FAM183 family / FAM183A and FAM183B related / Sperm-associated antigen 8 / Sperm acrosome-associated protein 9 / Cilia- and flagella-associated protein 95 / NDPK7, first NDPk domain / Cilia- and flagella-associated protein 107 / : / Sperm acrosome-associated protein 9 / Protein CFAP95 / Tektin / Cilia- and flagella-associated protein 276 / Tektin family / Protein of unknown function (DUF3695) / Cilia- and flagella-associated protein 77 / Cilia- and flagella-associated protein 77 / Uncharacterised protein FAM166/UPF0605 / Ciliary microtubule inner protein 2B-like / Nucleoside diphosphate kinase 7 / Meiosis-specific nuclear structural protein 1 / Piercer of microtubule wall 1/2 / Cilia- and flagella-associated protein 141 / Cilia- and flagella-associated protein 45 / NDPK7, second NDPk domain / Cilia- and flagella- associated protein 210 / CFAP53/TCHP / Trichohyalin-plectin-homology domain / Trichohyalin-plectin-homology domain / Piercer of microtubule wall 1/2 / Cilia- and flagella-associated protein 141 / RIB43A / RIB43A / DM10 domain / EF-hand domain-containing protein EFHC1/EFHC2/EFHB / DM10 domain / DM10 domain profile. / Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases. / Enkurin domain / Calmodulin-binding / Enkurin domain profile. / CFA20 domain / Cilia- and flagella-associated protein 20/CFAP20DC / CFA20 domain / Parkin co-regulated protein / Parkin co-regulated protein / Dual specificity phosphatase, catalytic domain / Nucleoside diphosphate kinase (NDPK)-like domain profile. / Dual specificity phosphatase, catalytic domain / Dual specificity phosphatase, catalytic domain / Dual specificity protein phosphatase domain / Dual specificity protein phosphatase domain profile. / Nucleoside diphosphate kinase / Nucleoside diphosphate kinase-like domain / Nucleoside diphosphate kinase / NDK / Nucleoside diphosphate kinase-like domain superfamily / EF-hand domain pair
類似検索 - ドメイン・相同性
GUANOSINE-5'-DIPHOSPHATE / GUANOSINE-5'-TRIPHOSPHATE / Uncharacterized protein / Piercer of microtubule wall 2 protein / Cilia and flagella associated protein 77 / Chromosome 20 C5orf49 homolog / Theg spermatid protein like / Sperm microtubule inner protein 11 / Sperm acrosome associated 9 / EF-hand domain-containing family member C2 ...GUANOSINE-5'-DIPHOSPHATE / GUANOSINE-5'-TRIPHOSPHATE / Uncharacterized protein / Piercer of microtubule wall 2 protein / Cilia and flagella associated protein 77 / Chromosome 20 C5orf49 homolog / Theg spermatid protein like / Sperm microtubule inner protein 11 / Sperm acrosome associated 9 / EF-hand domain-containing family member C2 / Chromosome 13 C20orf85 homolog / Protein SPMIP9 / Parkin coregulated gene protein / Tektin-3 / Sperm-associated microtubule inner protein 5 / Cilia- and flagella-associated protein 144 / Sperm-associated microtubule inner protein 10 / TEPP protein / Enkurin / Cilia- and flagella-associated protein 276 / Chromosome 19 C17orf98 homolog / Cilia- and flagella- associated protein 210 / Cilia- and flagella-associated protein 52 / EF-hand domain-containing protein 1 / Sperm-associated antigen 8 / EF-hand domain-containing family member B / Tektin bundle interacting protein 1 / Testis specific serine kinase 6 / Cilia- and flagella-associated protein 53 / Cilia- and flagella-associated protein 161 / CFAP97 domain containing 1 / Outer dense fiber of sperm tails 3 / Ciliary microtubule inner protein 2A / ATP6V1F neighbor / EF-hand domain-containing protein / Dual specificity phosphatase 21 / Meiosis-specific nuclear structural protein 1 / Protein SPMIP2 / Cilia-and flagella-associated protein 96 / EF-hand calcium-binding domain-containing protein 3 / Cilia- and flagella-associated protein 68 / Tektin-2 / Stabilizer of axonemal microtubules 4 / Cilia- and flagella-associated protein 107 / Tektin-4 / Tektin-5 / Tektin-like protein 1 / Tubulin alpha-3 chain / Sperm microtubule inner protein 6 / Tektin-1 / Protein SPMIP3 / Cilia- and flagella-associated protein 141 / Cilia- and flagella-associated protein 95 / Testis expressed 33 / RIB43A-like with coiled-coils protein 2 / Cilia- and flagella-associated protein 45 / Piercer of microtubule wall 1 protein / Tubulin beta-4B chain / Ciliary microtubule inner protein 2C / Nucleoside diphosphate kinase homolog 7 / Cilia- and flagella-associated protein 20
類似検索 - 構成要素
生物種Bos taurus (ウシ)
手法電子顕微鏡法 / 単粒子再構成法 / クライオ電子顕微鏡法 / 解像度: 3.6 Å
データ登録者Leung, M.R. / Zeng, J. / Zhang, R. / Zeev-Ben-Mordehai, T.
資金援助 オランダ, 1件
組織認可番号国
Netherlands Organisation for Scientific Research (NWO)740.018.007 オランダ
引用ジャーナル: Cell / 年: 2023
タイトル: Structural specializations of the sperm tail.
著者: Miguel Ricardo Leung / Jianwei Zeng / Xiangli Wang / Marc C Roelofs / Wei Huang / Riccardo Zenezini Chiozzi / Johannes F Hevler / Albert J R Heck / Susan K Dutcher / Alan Brown / Rui Zhang / ...著者: Miguel Ricardo Leung / Jianwei Zeng / Xiangli Wang / Marc C Roelofs / Wei Huang / Riccardo Zenezini Chiozzi / Johannes F Hevler / Albert J R Heck / Susan K Dutcher / Alan Brown / Rui Zhang / Tzviya Zeev-Ben-Mordehai /
要旨: Sperm motility is crucial to reproductive success in sexually reproducing organisms. Impaired sperm movement causes male infertility, which is increasing globally. Sperm are powered by a microtubule- ...Sperm motility is crucial to reproductive success in sexually reproducing organisms. Impaired sperm movement causes male infertility, which is increasing globally. Sperm are powered by a microtubule-based molecular machine-the axoneme-but it is unclear how axonemal microtubules are ornamented to support motility in diverse fertilization environments. Here, we present high-resolution structures of native axonemal doublet microtubules (DMTs) from sea urchin and bovine sperm, representing external and internal fertilizers. We identify >60 proteins decorating sperm DMTs; at least 15 are sperm associated and 16 are linked to infertility. By comparing DMTs across species and cell types, we define core microtubule inner proteins (MIPs) and analyze evolution of the tektin bundle. We identify conserved axonemal microtubule-associated proteins (MAPs) with unique tubulin-binding modes. Additionally, we identify a testis-specific serine/threonine kinase that links DMTs to outer dense fibers in mammalian sperm. Our study provides structural foundations for understanding sperm evolution, motility, and dysfunction at a molecular level.
履歴
登録2023年4月21日登録サイト: PDBE / 処理サイト: PDBE
改定 1.02023年11月22日Provider: repository / タイプ: Initial release

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構造の表示

構造ビューア分子:
MolmilJmol/JSmol

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集合体

登録構造単位
0: Cilia- and flagella-associated protein 95
0A: Sperm acrosome associated 9
0C: Sperm acrosome associated 9
0E: Sperm acrosome associated 9
0G: Sperm acrosome associated 9
0W: Sperm acrosome associated 9
0Y: Sperm acrosome associated 9
0a: Sperm acrosome associated 9
0c: Sperm acrosome associated 9
0e: Sperm acrosome associated 9
0g: Sperm acrosome associated 9
0i: Sperm acrosome associated 9
0k: Sperm acrosome associated 9
1: Testis specific serine kinase 6
2: Testis specific serine kinase 6
3: EF-hand domain-containing protein
A: ATP6V1F neighbor
A0: Outer dense fiber of sperm tails 3 like 1
A1: Outer dense fiber of sperm tails 3
A2: Outer dense fiber of sperm tails 3
A3: Outer dense fiber of sperm tails 3
A4: Outer dense fiber of sperm tails 3
A5: Outer dense fiber of sperm tails 3
A6: Outer dense fiber of sperm tails 3
A7: Outer dense fiber of sperm tails 3
A8: Outer dense fiber of sperm tails 3
A9: Outer dense fiber of sperm tails 3
AA: Tubulin alpha-3 chain
AB: Tubulin beta-4B chain
AC: Tubulin alpha-3 chain
AD: Tubulin beta-4B chain
AE: Tubulin alpha-3 chain
AF: Tubulin beta-4B chain
AG: Tubulin alpha-3 chain
AH: Tubulin beta-4B chain
AI: Tubulin alpha-3 chain
AJ: Tubulin beta-4B chain
AK: Tubulin alpha-3 chain
AL: Tubulin beta-4B chain
AM: Tubulin alpha-3 chain
AP: Protein Flattop
AQ: Protein Flattop
AR: Protein Flattop
AS: Protein Flattop
AT: Cilia- and flagella-associated protein 53
AU: Cilia- and flagella-associated protein 53
AV: Nucleoside diphosphate kinase 7
AW: Nucleoside diphosphate kinase 7
Aa: EF-hand domain-containing family member C2
Ab: EF-hand domain-containing family member C2
Ac: EF-hand domain-containing family member C2
Ad: EF-hand domain-containing family member C2
Al: Family with sequence similarity 166 member A
Am: Family with sequence similarity 166 member A
An: Family with sequence similarity 166 member A
Ao: Family with sequence similarity 166 member A
Ap: Protein FAM166C
Aq: Protein FAM166C
Ar: Protein FAM166C
At: Outer dense fiber of sperm tails 3B
Au: Outer dense fiber of sperm tails 3
Av: Outer dense fiber of sperm tails 3
Aw: Outer dense fiber of sperm tails 3
Ax: Outer dense fiber of sperm tails 3B
Ay: Outer dense fiber of sperm tails 3
Az: Outer dense fiber of sperm tails 3
B: ATP6V1F neighbor
B0: Spermatid-specific manchette-related protein 1
B1: Spermatid-specific manchette-related protein 1
B2: Spermatid-specific manchette-related protein 1
B3: Spermatid-specific manchette-related protein 1
B4: Spermatid-specific manchette-related protein 1
B5: Enkurin
B6: Enkurin
B7: Family with sequence similarity 166 member A
B8: Spermatid-specific manchette-related protein 1
B9: Spermatid-specific manchette-related protein 1
BA: Tubulin alpha-3 chain
BB: Tubulin beta-4B chain
BC: Tubulin alpha-3 chain
BD: Tubulin beta-4B chain
BE: Tubulin alpha-3 chain
BF: Tubulin beta-4B chain
BG: Tubulin alpha-3 chain
BH: Tubulin beta-4B chain
BI: Tubulin alpha-3 chain
BJ: Tubulin beta-4B chain
BK: Tubulin alpha-3 chain
BL: Tubulin beta-4B chain
BM: Tubulin alpha-3 chain
BN: Outer dense fiber of sperm tails 3 like 1
BO: Coiled-coil domain-containing protein 105
BP: Coiled-coil domain-containing protein 105
BQ: Coiled-coil domain-containing protein 105
BR: Coiled-coil domain-containing protein 105
BS: Protein phosphatase 1 regulatory subunit 32
BT: Protein phosphatase 1 regulatory subunit 32
BU: RIB43A-like with coiled-coils protein 2
BV: RIB43A-like with coiled-coils protein 2
BW: Cilia- and flagella-associated protein 107
BX: Cilia- and flagella-associated protein 107
BY: Family with sequence similarity 166 member A
BZ: Family with sequence similarity 166 member A
Ba: Family with sequence similarity 166 member A
Bb: Family with sequence similarity 166 member A
Bc: Family with sequence similarity 166 member A
Bd: Family with sequence similarity 166 member A
Be: Family with sequence similarity 166 member A
Bf: Piercer of microtubule wall 1 protein
Bg: Piercer of microtubule wall 1 protein
Bh: Piercer of microtubule wall 2 protein
Bi: RIB43A-like with coiled-coils protein 2
Bj: RIB43A-like with coiled-coils protein 2
Bk: RIB43A-like with coiled-coils protein 2
Bl: Stabilizer of axonemal microtubules 1
Bm: Stabilizer of axonemal microtubules 1
Bn: Stabilizer of axonemal microtubules 1
Bo: Stabilizer of axonemal microtubules 1
Bp: Stabilizer of axonemal microtubules 1
Bq: Stabilizer of axonemal microtubules 3
Br: Meiosis-specific nuclear structural protein 1
Bs: Meiosis-specific nuclear structural protein 1
Bu: Stabilizer of axonemal microtubules 3
By: Enkurin
Bz: Enkurin
C: ATP6V1F neighbor
C0: Tektin-3
C1: Tektin-5
C2: Tektin-3
C3: Tektin-3
C4: Tektin-3
C5: Tektin-3
C6: Tektin-3
C7: Tektin-3
C8: Tektin-3
C9: Tektin-3
CA: Tubulin alpha-3 chain
CB: Tubulin beta-4B chain
CC: Tubulin alpha-3 chain
CD: Tubulin beta-4B chain
CE: Tubulin alpha-3 chain
CF: Tubulin beta-4B chain
CG: Tubulin alpha-3 chain
CH: Tubulin beta-4B chain
CI: Tubulin alpha-3 chain
CJ: Tubulin beta-4B chain
CK: Tubulin alpha-3 chain
CL: Tubulin beta-4B chain
CM: Tubulin alpha-3 chain
CN: Family with sequence similarity 166 member A
CO: Family with sequence similarity 166 member A
CQ: Spermatid-specific manchette-related protein 1
CR: Spermatid-specific manchette-related protein 1
CS: Spermatid-specific manchette-related protein 1
CT: Sperm acrosome associated 9
CU: Sperm acrosome associated 9
CV: Sperm acrosome associated 9
CW: Sperm-associated antigen 8
CX: Sperm acrosome associated 9
CY: Sperm acrosome associated 9
CZ: Sperm acrosome associated 9
Ca: Sperm acrosome associated 9
Cb: Sperm acrosome associated 9
Cc: Sperm acrosome associated 9
Cd: Sperm acrosome associated 9
Ce: Sperm acrosome associated 9
Cf: Sperm acrosome associated 9
Cg: Sperm acrosome associated 9
Ch: Sperm acrosome associated 9
Ci: Sperm acrosome associated 9
Cj: Sperm acrosome associated 9
Ck: Sperm acrosome associated 9
Cl: Spermatogenesis-associated protein 48
Cm: Tektin-1
Cn: Tektin-1
Co: Tektin-1
Cp: Tektin-1
Cq: Tektin-2
Cr: Tektin-2
Cs: Tektin-2
Ct: Tektin-2
Cu: Tektin-2
Cv: Tektin-2
Cw: Tektin-2
Cx: Tektin-2
Cy: Tektin-2
Cz: Tektin-5
D: Uncharacterized protein C1orf100 homolog
D0: Tektin-5
D1: Tektin-5
D2: Tektin-5
D3: Tektin-5
D4: Tektin-5
D5: Tektin-5
D6: Tektin-5
D7: Tektin-5
D8: Tektin-5
D9: Tektin-5
DA: Tubulin alpha-3 chain
DB: Tubulin beta-4B chain
DC: Tubulin alpha-3 chain
DD: Tubulin beta-4B chain
DE: Tubulin alpha-3 chain
DF: Tubulin beta-4B chain
DG: Tubulin alpha-3 chain
DH: Tubulin beta-4B chain
DI: Tubulin alpha-3 chain
DJ: Tubulin beta-4B chain
DK: Tubulin alpha-3 chain
DL: Tubulin beta-4B chain
DM: Tubulin alpha-3 chain
DN: Tubulin beta-4B chain
DO: Tektin-3
DP: Tektin-5
DQ: Tektin-5
DR: Tektin-5
DS: Tektin-5
DT: Tektin-5
DU: Tektin-5
DV: Tektin-5
DW: Tektin-5
DX: Tektin-5
DY: TEPP protein
DZ: TEPP protein
Da: TEPP protein
Db: Uncharacterized protein MGC137036
Dc: Uncharacterized protein MGC137036
Dd: Uncharacterized protein MGC137036
De: Testis expressed 33
Df: Testis-expressed sequence 37 protein
Dg: Testis-expressed sequence 37 protein
Dh: Testis-expressed sequence 37 protein
Di: Testis-expressed protein 43
Dj: Testis-expressed protein 43
Dk: Testis-expressed protein 43
Dl: Testis-expressed protein 43
Dm: Testis expressed 49
Dn: Theg spermatid protein like
E: EF-hand domain-containing family member B
E1: Tektin bundle interacting protein 1
E2: Tektin bundle interacting protein 1
E3: Tektin bundle interacting protein 1
E4: Tektin bundle interacting protein 1
EA: Tektin-5
EB: Tubulin beta-4B chain
EC: Tubulin alpha-3 chain
ED: Tubulin beta-4B chain
EE: Tubulin alpha-3 chain
EF: Tubulin beta-4B chain
EG: Tubulin alpha-3 chain
EH: Tubulin beta-4B chain
EI: Tubulin alpha-3 chain
EJ: Tubulin beta-4B chain
EK: Tubulin alpha-3 chain
EL: Tubulin beta-4B chain
EM: Tubulin alpha-3 chain
EN: Tubulin beta-4B chain
EO: Tektin-5
EP: Tektin-5
EQ: Tektin-5
ER: Tektin-5
ES: Tektin-4
ET: Tektin-4
EU: Tektin-4
EV: Tektin-4
EW: Tektin-4
EX: Tektin-4
EY: Tektin-4
EZ: Tektin-4
Ee: TEPP protein
F: EF-hand domain-containing family member B
F2: Tektin-3
F3: Tektin-3
F4: Tektin-3
F5: Tektin-3
F6: Tektin-3
FB: Tubulin beta-4B chain
FC: Tubulin alpha-3 chain
FD: Tubulin beta-4B chain
FE: Tubulin alpha-3 chain
FF: Tubulin beta-4B chain
FG: Tubulin alpha-3 chain
FH: Tubulin beta-4B chain
FI: Tubulin alpha-3 chain
FJ: Tubulin beta-4B chain
FK: Tubulin alpha-3 chain
FL: Tubulin beta-4B chain
FM: Tubulin alpha-3 chain
FN: Tubulin beta-4B chain
G: Chromosome 7 open reading frame 31
GB: Tubulin beta-4B chain
GC: Tubulin alpha-3 chain
GD: Tubulin beta-4B chain
GE: Tubulin alpha-3 chain
GF: Tubulin beta-4B chain
GG: Tubulin alpha-3 chain
GH: Tubulin beta-4B chain
GI: Tubulin alpha-3 chain
GJ: Tubulin beta-4B chain
GK: Tubulin alpha-3 chain
GL: Tubulin beta-4B chain
GM: Tubulin alpha-3 chain
GN: Tubulin beta-4B chain
H: Cilia- and flagella- associated protein 210
HB: Tubulin beta-4B chain
HC: Tubulin alpha-3 chain
HD: Tubulin beta-4B chain
HE: Tubulin alpha-3 chain
HF: Tubulin beta-4B chain
HG: Tubulin alpha-3 chain
HH: Tubulin beta-4B chain
HI: Tubulin alpha-3 chain
HJ: Tubulin beta-4B chain
HK: Tubulin alpha-3 chain
HL: Tubulin beta-4B chain
HM: Tubulin alpha-3 chain
HN: Tubulin beta-4B chain
HO: Tubulin alpha-3 chain
I: EF-hand domain-containing protein 1
IB: Tubulin beta-4B chain
IC: Tubulin alpha-3 chain
ID: Tubulin beta-4B chain
IE: Tubulin alpha-3 chain
IF: Tubulin beta-4B chain
IG: Tubulin alpha-3 chain
IH: Tubulin beta-4B chain
II: Tubulin alpha-3 chain
IJ: Tubulin beta-4B chain
IK: Tubulin alpha-3 chain
IL: Tubulin beta-4B chain
IM: Tubulin alpha-3 chain
IN: Tubulin beta-4B chain
IO: Tubulin alpha-3 chain
J: Uncharacterized protein C10orf82 homolog
JB: Tubulin beta-4B chain
JC: Tubulin alpha-3 chain
JD: Tubulin beta-4B chain
JE: Tubulin alpha-3 chain
JF: Tubulin beta-4B chain
JG: Tubulin alpha-3 chain
JH: Tubulin beta-4B chain
JI: Tubulin alpha-3 chain
JJ: Tubulin beta-4B chain
JK: Tubulin alpha-3 chain
JL: Tubulin beta-4B chain
JM: Tubulin alpha-3 chain
JN: Tubulin beta-4B chain
K: Uncharacterized protein C10orf82 homolog
K1: Cilia- and flagella-associated protein 144
KB: Tubulin beta-4B chain
KC: Tubulin alpha-3 chain
KD: Tubulin beta-4B chain
KE: Tubulin alpha-3 chain
KF: Tubulin beta-4B chain
KG: Tubulin alpha-3 chain
KH: Tubulin beta-4B chain
KI: Tubulin alpha-3 chain
KJ: Tubulin beta-4B chain
KK: Tubulin alpha-3 chain
KL: Tubulin beta-4B chain
KM: Tubulin alpha-3 chain
KN: Tubulin beta-4B chain
KO: Tubulin alpha-3 chain
L: Uncharacterized protein C10orf82 homolog
L1: Chromosome 20 C5orf49 homolog
L2: Chromosome 20 C5orf49 homolog
LB: Tubulin beta-4B chain
LC: Tubulin alpha-3 chain
LD: Tubulin beta-4B chain
LE: Tubulin alpha-3 chain
LF: Tubulin beta-4B chain
LG: Tubulin alpha-3 chain
LH: Tubulin beta-4B chain
LI: Tubulin alpha-3 chain
LJ: Tubulin beta-4B chain
LK: Tubulin alpha-3 chain
LL: Tubulin beta-4B chain
LM: Tubulin alpha-3 chain
LN: Tubulin beta-4B chain
M: Uncharacterized protein C10orf82 homolog
MB: Tubulin beta-4B chain
MC: Tubulin alpha-3 chain
MD: Tubulin beta-4B chain
ME: Tubulin alpha-3 chain
MF: Tubulin beta-4B chain
MG: Tubulin alpha-3 chain
MH: Tubulin beta-4B chain
MI: Tubulin alpha-3 chain
MJ: Tubulin beta-4B chain
MK: Tubulin alpha-3 chain
ML: Tubulin beta-4B chain
MM: Tubulin alpha-3 chain
MN: Tubulin beta-4B chain
N: Chromosome 19 C17orf98 homolog
N0: Tubulin beta-4B chain
NA: Tubulin alpha-3 chain
NB: Tubulin beta-4B chain
NC: Tubulin alpha-3 chain
ND: Tubulin beta-4B chain
NE: Tubulin alpha-3 chain
NF: Tubulin beta-4B chain
NG: Tubulin alpha-3 chain
NH: Tubulin beta-4B chain
NI: Tubulin alpha-3 chain
NJ: Tubulin beta-4B chain
NK: Tubulin alpha-3 chain
NL: Tubulin beta-4B chain
O: Chromosome 19 C17orf98 homolog
O0: Tubulin beta-4B chain
OA: Tubulin alpha-3 chain
OB: Tubulin beta-4B chain
OC: Tubulin alpha-3 chain
OD: Tubulin beta-4B chain
OE: Tubulin alpha-3 chain
OF: Tubulin beta-4B chain
OG: Tubulin alpha-3 chain
OH: Tubulin beta-4B chain
OI: Tubulin alpha-3 chain
OJ: Tubulin beta-4B chain
OK: Tubulin alpha-3 chain
OL: Tubulin beta-4B chain
P: Chromosome 13 C20orf85 homolog
PA: Tubulin alpha-3 chain
PB: Tubulin beta-4B chain
PC: Tubulin alpha-3 chain
PD: Tubulin beta-4B chain
PE: Tubulin alpha-3 chain
PF: Tubulin beta-4B chain
PG: Tubulin alpha-3 chain
PH: Tubulin beta-4B chain
PI: Tubulin alpha-3 chain
PJ: Tubulin beta-4B chain
PK: Tubulin alpha-3 chain
PL: Tubulin beta-4B chain
PM: Tubulin alpha-3 chain
Q: Cilia- and flagella-associated protein 68
QA: Tubulin alpha-3 chain
QB: Tubulin beta-4B chain
QC: Tubulin alpha-3 chain
QD: Tubulin beta-4B chain
QE: Tubulin alpha-3 chain
QF: Tubulin beta-4B chain
QG: Tubulin alpha-3 chain
QH: Tubulin beta-4B chain
QI: Tubulin alpha-3 chain
QJ: Tubulin beta-4B chain
QK: Tubulin alpha-3 chain
QL: Tubulin beta-4B chain
QM: Tubulin alpha-3 chain
R: Cilia and flagella associated protein 77
RA: Tubulin alpha-3 chain
RB: Tubulin beta-4B chain
RC: Tubulin alpha-3 chain
RD: Tubulin beta-4B chain
RE: Tubulin alpha-3 chain
RF: Tubulin beta-4B chain
RG: Tubulin alpha-3 chain
RH: Tubulin beta-4B chain
RI: Tubulin alpha-3 chain
RJ: Tubulin beta-4B chain
RK: Tubulin alpha-3 chain
RL: Tubulin beta-4B chain
RM: Tubulin alpha-3 chain
S: Cilia and flagella associated protein 77
SA: Tubulin alpha-3 chain
SB: Tubulin beta-4B chain
SC: Tubulin alpha-3 chain
SD: Tubulin beta-4B chain
SE: Tubulin alpha-3 chain
SF: Tubulin beta-4B chain
SG: Tubulin alpha-3 chain
SH: Tubulin beta-4B chain
SI: Tubulin alpha-3 chain
SJ: Tubulin beta-4B chain
SK: Tubulin alpha-3 chain
SL: Tubulin beta-4B chain
SM: Tubulin alpha-3 chain
T: Cilia and flagella associated protein 77
TB: Tubulin beta-4B chain
TC: Tubulin alpha-3 chain
TD: Tubulin beta-4B chain
TE: Tubulin alpha-3 chain
TF: Tubulin beta-4B chain
TG: Tubulin alpha-3 chain
TH: Tubulin beta-4B chain
TI: Tubulin alpha-3 chain
TJ: Tubulin beta-4B chain
TK: Tubulin alpha-3 chain
TL: Tubulin beta-4B chain
TM: Tubulin alpha-3 chain
U: Cilia and flagella associated protein 77
UB: Tubulin beta-4B chain
UC: Tubulin alpha-3 chain
UD: Tubulin beta-4B chain
UE: Tubulin alpha-3 chain
UF: Tubulin beta-4B chain
UG: Tubulin alpha-3 chain
UH: Tubulin beta-4B chain
UI: Tubulin alpha-3 chain
UJ: Tubulin beta-4B chain
UK: Tubulin alpha-3 chain
UL: Tubulin beta-4B chain
UM: Tubulin alpha-3 chain
UN: Tubulin beta-4B chain
V: Cilia- and flagella-associated protein 95
VB: Tubulin beta-4B chain
VC: Tubulin alpha-3 chain
VD: Tubulin beta-4B chain
VE: Tubulin alpha-3 chain
VF: Tubulin beta-4B chain
VG: Tubulin alpha-3 chain
VH: Tubulin beta-4B chain
VI: Tubulin alpha-3 chain
VJ: Tubulin beta-4B chain
VK: Tubulin alpha-3 chain
VL: Tubulin beta-4B chain
VM: Tubulin alpha-3 chain
VN: Tubulin beta-4B chain
W: UPF0602 protein C4orf47 homolog
WB: Tubulin beta-4B chain
WC: Tubulin alpha-3 chain
WD: Tubulin beta-4B chain
WE: Tubulin alpha-3 chain
WF: Tubulin beta-4B chain
WG: Tubulin alpha-3 chain
WH: Tubulin beta-4B chain
WI: Tubulin alpha-3 chain
WJ: Tubulin beta-4B chain
WK: Tubulin alpha-3 chain
WL: Tubulin beta-4B chain
WM: Tubulin alpha-3 chain
WN: Tubulin beta-4B chain
X: EF-hand domain-containing protein 1
XG: Cilia- and flagella-associated protein 20
XH: Cilia- and flagella-associated protein 20
XI: Cilia- and flagella-associated protein 20
XJ: Cilia- and flagella-associated protein 20
XK: Cilia- and flagella-associated protein 20
XL: Cilia- and flagella-associated protein 20
XM: Cilia- and flagella-associated protein 20
Y: EF-hand domain-containing protein 1
YG: Parkin coregulated gene protein
YH: Parkin coregulated gene protein
YI: Parkin coregulated gene protein
YJ: Parkin coregulated gene protein
YK: Parkin coregulated gene protein
YL: Parkin coregulated gene protein
Z: CFAP97 domain containing 1
a: Cilia- and flagella-associated protein 45
b: Cilia- and flagella-associated protein 45
c: Cilia- and flagella-associated protein 45
d: Cilia- and flagella-associated protein 45
e: Cilia- and flagella-associated protein 52
f: Cilia- and flagella-associated protein 52
g: Cilia- and flagella-associated protein 52
h: Cilia- and flagella-associated protein 141
i: Cilia- and flagella-associated protein 161
j: Cilia- and flagella-associated protein 161
k: Dual specificity phosphatase 21
ke: Uncharacterized protein C4orf45 homolog
l: Dual specificity phosphatase 21
m: Dual specificity phosphatase 21
n: Dual specificity phosphatase 21
o: Cilia- and flagella- associated protein 210
p: CFAP97 domain containing 1
q: CFAP97 domain containing 1
r: Cilia- and flagella-associated protein 276
s: Cilia- and flagella-associated protein 276
t: Cilia- and flagella-associated protein 276
u: EF-hand calcium-binding domain-containing protein 3
v: EF-hand calcium-binding domain-containing protein 3
w: EF-hand calcium-binding domain-containing protein 3
x: Testis specific serine kinase 6
y: EF-hand domain-containing protein
z: EF-hand domain-containing protein
ヘテロ分子


分子量 (理論値)分子数
合計 (水以外)25,760,4041026
ポリマ－25,611,019575
非ポリマー149,385451
水00
1


  • 登録構造と同一
  • 登録者が定義した集合体
  • 根拠: 電子顕微鏡法
タイプ名称対称操作数
identity operation1_5551

-
要素

+
Cilia- and flagella-associated protein ... , 11種, 28分子 0VATAUBWBXK1QXGXHXIXJXKXLXMabcdefghijrst

#1: タンパク質 Cilia- and flagella-associated protein 95


分子量: 26661.025 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q32L77
#11: タンパク質 Cilia- and flagella-associated protein 53


分子量: 62138.992 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: F1N7G5
#22: タンパク質 Cilia- and flagella-associated protein 107


分子量: 23271.453 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q2TA11
#49: タンパク質 Cilia- and flagella-associated protein 144 / Protein FAM183A


分子量: 16178.324 Da / 分子数: 1 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A8QW39
#53: タンパク質 Cilia- and flagella-associated protein 68


分子量: 20163.260 Da / 分子数: 1 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q2T9Q3
#56: タンパク質
Cilia- and flagella-associated protein 20


分子量: 22781.389 Da / 分子数: 7 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q6B857
#59: タンパク質
Cilia- and flagella-associated protein 45


分子量: 65800.328 Da / 分子数: 4 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q32LN4
#60: タンパク質 Cilia- and flagella-associated protein 52


分子量: 68719.602 Da / 分子数: 3 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: E1BKF9
#61: タンパク質 Cilia- and flagella-associated protein 141


分子量: 12361.437 Da / 分子数: 1 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q32L75
#62: タンパク質 Cilia- and flagella-associated protein 161


分子量: 36519.594 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: F6RJC2
#65: タンパク質 Cilia- and flagella-associated protein 276


分子量: 19387.805 Da / 分子数: 3 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: E1B9I5

+
タンパク質 , 36種, 489分子 0A0C0E0G0W0Y0a0c0e0g0i0kCTCUCVCXCYCZCaCbCcCdCeCfCgChCiCjCk1...

#2: タンパク質 ...
Sperm acrosome associated 9


分子量: 25174.801 Da / 分子数: 29 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A0A3Q1MYU9
#3: タンパク質 Testis specific serine kinase 6


分子量: 30256.893 Da / 分子数: 3 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: F1N2S7
#5: タンパク質 ATP6V1F neighbor


分子量: 20279.707 Da / 分子数: 3 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: G3X8G1
#8: タンパク質 ...
Tubulin alpha-3 chain / Alpha-tubulin 3


分子量: 49978.344 Da / 分子数: 149 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ)
参照: UniProt: Q32KN8, 加水分解酵素; 酸無水物に作用; GTPに作用・細胞または細胞小器官の運動に関与
#9: タンパク質 ...
Tubulin beta-4B chain / Tubulin beta-2C chain


分子量: 49877.824 Da / 分子数: 153 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q3MHM5
#10: タンパク質
Protein Flattop


分子量: 21214.035 Da / 分子数: 4 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ)
#12: タンパク質 Nucleoside diphosphate kinase 7 / NDK 7 / NDP kinase 7


分子量: 42650.895 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q5E9Y9, nucleoside-diphosphate kinase
#14: タンパク質
Family with sequence similarity 166 member A


分子量: 36251.363 Da / 分子数: 14 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: G3X6E2
#15: タンパク質 Protein FAM166C


分子量: 23414.553 Da / 分子数: 3 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q3SZR5
#17: タンパク質
Spermatid-specific manchette-related protein 1 / Ciliated bronchial epithelial protein 1


分子量: 35109.043 Da / 分子数: 10 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q32KP0
#18: タンパク質
Enkurin


分子量: 30215.129 Da / 分子数: 4 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: E1B836
#19: タンパク質
Coiled-coil domain-containing protein 105


分子量: 57747.836 Da / 分子数: 4 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q2YDN4
#20: タンパク質 Protein phosphatase 1 regulatory subunit 32


分子量: 47818.125 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q2T9T0
#21: タンパク質
RIB43A-like with coiled-coils protein 2


分子量: 44773.418 Da / 分子数: 5 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q32LJ7
#27: タンパク質 Meiosis-specific nuclear structural protein 1


分子量: 60538.367 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q2KIQ2
#28: タンパク質
Tektin-3


分子量: 56760.910 Da / 分子数: 15 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A6H782
#29: タンパク質 ...
Tektin-5


分子量: 56564.809 Da / 分子数: 26 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q2YDI7
#30: タンパク質 Sperm-associated antigen 8


分子量: 51604.398 Da / 分子数: 1 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: E1BNS6
#31: タンパク質 Spermatogenesis-associated protein 48


分子量: 49735.164 Da / 分子数: 1 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ)
#32: タンパク質
Tektin-1


分子量: 48798.375 Da / 分子数: 4 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q32KZ9
#33: タンパク質
Tektin-2


分子量: 49962.656 Da / 分子数: 9 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q2T9Q6
#35: タンパク質
TEPP protein / Testis / prostate and placenta expressed


分子量: 24939.441 Da / 分子数: 4 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: C9QNT9
#41: タンパク質 Theg spermatid protein like


分子量: 50941.473 Da / 分子数: 1 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A0A3Q1MNS9
#43: タンパク質
Tektin bundle interacting protein 1


分子量: 24559.482 Da / 分子数: 4 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: F1MZJ1
#44: タンパク質
Tektin-4


分子量: 52025.488 Da / 分子数: 8 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q2TA38
#45: タンパク質 Chromosome 7 open reading frame 31


分子量: 67685.570 Da / 分子数: 1 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ)
#46: タンパク質 Cilia- and flagella- associated protein 210


分子量: 65437.598 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: E1BJL9
#50: タンパク質 Chromosome 20 C5orf49 homolog


分子量: 16820.848 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A0A3Q1LU45
#51: タンパク質 Chromosome 19 C17orf98 homolog


分子量: 17813.178 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: E1BC62
#52: タンパク質 Chromosome 13 C20orf85 homolog


分子量: 15810.196 Da / 分子数: 1 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A0A3S5ZPE5
#54: タンパク質
Cilia and flagella associated protein 77


分子量: 32999.203 Da / 分子数: 4 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A0A3Q1LJD6
#55: タンパク質 UPF0602 protein C4orf47 homolog


分子量: 34554.371 Da / 分子数: 1 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q2T9M0
#57: タンパク質
Parkin coregulated gene protein


分子量: 29323.059 Da / 分子数: 6 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A5PK71
#58: タンパク質 CFAP97 domain containing 1


分子量: 19600.385 Da / 分子数: 3 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: G3N1Q7
#63: タンパク質
Dual specificity phosphatase 21 / Similar to Dual specificity protein phosphatase 18 (Low molecular weight dual specificity phosphatase 20)


分子量: 22075.557 Da / 分子数: 4 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q0II40
#66: タンパク質 EF-hand calcium-binding domain-containing protein 3


分子量: 50207.961 Da / 分子数: 3 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q2T9P0

+
EF-hand domain-containing ... , 4種, 12分子 3yzAaAbAcAdEFIXY

#4: タンパク質 EF-hand domain-containing protein


分子量: 31349.949 Da / 分子数: 3 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: G5E5A3
#13: タンパク質
EF-hand domain-containing family member C2


分子量: 85566.766 Da / 分子数: 4 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A0A3Q1N1R0
#42: タンパク質 EF-hand domain-containing family member B / Cilia- and flagella-associated protein 21


分子量: 97960.547 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: F1MMV1
#47: タンパク質 EF-hand domain-containing protein 1 / Myoclonin-1


分子量: 74125.344 Da / 分子数: 3 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: E1BKH1

+
Outer dense fiber of sperm tails ... , 3種, 18分子 A0BNA1A2A3A4A5A6A7A8A9AuAvAwAyAzAtAx

#6: タンパク質 Outer dense fiber of sperm tails 3 like 1


分子量: 30860.854 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ)
#7: タンパク質
Outer dense fiber of sperm tails 3


分子量: 27684.936 Da / 分子数: 14 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: G3X6A7
#16: タンパク質 Outer dense fiber of sperm tails 3B


分子量: 32579.918 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ)

+
Piercer of microtubule wall ... , 2種, 3分子 BfBgBh

#23: タンパク質 Piercer of microtubule wall 1 protein / Pierce1 / UPF0691 protein C9orf116 homolog


分子量: 15673.458 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q32P67
#24: タンパク質 Piercer of microtubule wall 2 protein


分子量: 13784.531 Da / 分子数: 1 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A0A3Q1LFK7

+
Stabilizer of axonemal microtubules ... , 2種, 7分子 BlBmBnBoBpBqBu

#25: タンパク質
Stabilizer of axonemal microtubules 1


分子量: 40613.059 Da / 分子数: 5 / 由来タイプ: 天然
詳細: MAPTKGKCVCELCSCGRHHCPHLPTKIYDKTEKPCLLSEYTENYPVYHSYLPRESFKPKM DYQRACTPMEGLTTSRRDFGPHKVLPVKIHQPNPFVPSEENMDLQTTYKQDYNPYPLCRV DPFKPRDSKYPCGDKMESLPTYKADYLPWNQPRRELLRPPHHYRPASTKFDSRTTQQDDY ...詳細: MAPTKGKCVCELCSCGRHHCPHLPTKIYDKTEKPCLLSEYTENYPVYHSYLPRESFKPKM DYQRACTPMEGLTTSRRDFGPHKVLPVKIHQPNPFVPSEENMDLQTTYKQDYNPYPLCRV DPFKPRDSKYPCGDKMESLPTYKADYLPWNQPRRELLRPPHHYRPASTKFDSRTTQQDDY SMKGLVNTRSCKPPAVPKLCNVPLEDLTNYKMSYVAHPLEKRFVHESEKFRPCEIPFESL TTHKESYRGLMGEPAKSLKPPARPYGLDTPFSNTTEFRDKYQAWPTPQVFSKPPSMYVPP EEKMDLLTTVQTHYTYPKGAPAESCRPALSVKKGGRFEGSTTTKEDYKQWASTRTEPAKP IPQLNLPTEPLDCLTTARAHYVPHLPMMTKSCKPVWSGPQGNIPVEGQTTYTISFTPKEM SRCLASYPEPPGYIFEEIDALGHRIYRPVSQTGSRRSSRFSVGDSENPNQQELTVSA
由来: (天然) Bos taurus (ウシ)
#26: タンパク質 Stabilizer of axonemal microtubules 3


分子量: 37465.422 Da / 分子数: 2 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ)

+
Uncharacterized protein ... , 4種, 9分子 DDbDcDdJKLMke

#34: タンパク質 Uncharacterized protein C1orf100 homolog


分子量: 16642.066 Da / 分子数: 1 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q32L72
#36: タンパク質 Uncharacterized protein MGC137036


分子量: 21238.109 Da / 分子数: 3 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A0A3Q1LFG5
#48: タンパク質
Uncharacterized protein C10orf82 homolog


分子量: 26677.043 Da / 分子数: 4 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A6QPC0
#64: タンパク質 Uncharacterized protein C4orf45 homolog


分子量: 22640.896 Da / 分子数: 1 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q2KIR0

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Testis expressed ... , 2種, 2分子 DeDm

#37: タンパク質 Testis expressed 33 / Uncharacterized protein MGC133880


分子量: 30322.604 Da / 分子数: 1 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: Q32LI7
#40: タンパク質 Testis expressed 49


分子量: 15441.421 Da / 分子数: 1 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A0A3Q1MT14

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Testis-expressed ... , 2種, 7分子 DfDgDhDiDjDkDl

#38: タンパク質 Testis-expressed sequence 37 protein


分子量: 20375.061 Da / 分子数: 3 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A5PJD8
#39: タンパク質
Testis-expressed protein 43


分子量: 15209.745 Da / 分子数: 4 / 由来タイプ: 天然 / 由来: (天然) Bos taurus (ウシ) / 参照: UniProt: A8SMG2

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非ポリマー , 3種, 451分子

#67: 化合物...
ChemComp-GTP / GUANOSINE-5'-TRIPHOSPHATE / GTP


分子量: 523.180 Da / 分子数: 149 / 由来タイプ: 合成 / 式: C10H16N5O14P3 / コメント: GTP, エネルギー貯蔵分子*YM
#68: 化合物...
ChemComp-MG / MAGNESIUM ION / マグネシウムジカチオン


分子量: 24.305 Da / 分子数: 149 / 由来タイプ: 合成 / 式: Mg
#69: 化合物...
ChemComp-GDP / GUANOSINE-5'-DIPHOSPHATE / GDP


タイプ: RNA linking / 分子量: 443.201 Da / 分子数: 153 / 由来タイプ: 合成 / 式: C10H15N5O11P2 / コメント: GDP, エネルギー貯蔵分子*YM

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詳細

研究の焦点であるリガンドがあるかN

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実験情報

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実験

実験手法: 電子顕微鏡法
EM実験試料の集合状態: FILAMENT / ３次元再構成法: 単粒子再構成法

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試料調製

構成要素名称: 48-nm repeat of the native axonemal doublet microtubule from bovine sperm
タイプ: COMPLEX / Entity ID: #1-#66 / 由来: NATURAL
分子量実験値: NO
由来(天然)生物種: Bos taurus (ウシ)
緩衝液pH: 7.9
試料包埋: NO / シャドウイング: NO / 染色: NO / 凍結: YES
試料支持グリッドの材料: COPPER / グリッドのサイズ: 200 divisions/in. / グリッドのタイプ: Quantifoil
急速凍結装置: HOMEMADE PLUNGER / 凍結剤: ETHANE-PROPANE

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電子顕微鏡撮影

実験機器
モデル: Talos Arctica / 画像提供: FEI Company
顕微鏡モデル: FEI TALOS ARCTICA
電子銃電子線源: FIELD EMISSION GUN / 加速電圧: 200 kV / 照射モード: FLOOD BEAM
電子レンズモード: BRIGHT FIELD / 最大 デフォーカス（公称値）: 2500 nm / 最小 デフォーカス（公称値）: 500 nm
試料ホルダ凍結剤: NITROGEN
撮影電子線照射量: 50 e/Å2 / 検出モード: SUPER-RESOLUTION
フィルム・検出器のモデル: GATAN K2 SUMMIT (4k x 4k)

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解析

EMソフトウェア
ID名称バージョンカテゴリ
1RELION3.1粒子像選択
2SerialEM画像取得
4RELION3.1CTF補正
10RELION3.1初期オイラー角割当
11RELION3.1最終オイラー角割当
13RELION3.1３次元再構成
CTF補正タイプ: PHASE FLIPPING AND AMPLITUDE CORRECTION
粒子像の選択選択した粒子像数: 532665
対称性点対称性: C1 (非対称)
3次元再構成解像度: 3.6 Å / 解像度の算出法: FSC 0.143 CUT-OFF / 粒子像の数: 34083 / 対称性のタイプ: POINT

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万見について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月：コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか？ / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例：em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見 (Yorodumi)

幾万の構造データを、幾万の視点から

  • 万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
  • EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

他の情報も見る