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Yorodumi- PDB-8k7j: Crystal structure of human lysosomal alpha-galactosidase A in com... -
+Open data
-Basic information
Entry | Database: PDB / ID: 8k7j | |||||||||
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Title | Crystal structure of human lysosomal alpha-galactosidase A in complex with (2R,3R,4S,5R)-2-((dimethylamino)methyl)-5-(hydroxymethyl)pyrrolidine-3,4-diol | |||||||||
Components | Alpha-galactosidase A | |||||||||
Keywords | HYDROLASE / alpha-galactosidase / glycosidase / iminosugar | |||||||||
Function / homology | Function and homology information glycosylceramide catabolic process / negative regulation of nitric-oxide synthase activity / alpha-galactosidase / alpha-galactosidase activity / glycosphingolipid catabolic process / oligosaccharide metabolic process / glycoside catabolic process / galactoside binding / negative regulation of nitric oxide biosynthetic process / Glycosphingolipid catabolism ...glycosylceramide catabolic process / negative regulation of nitric-oxide synthase activity / alpha-galactosidase / alpha-galactosidase activity / glycosphingolipid catabolic process / oligosaccharide metabolic process / glycoside catabolic process / galactoside binding / negative regulation of nitric oxide biosynthetic process / Glycosphingolipid catabolism / catalytic activity / lysosomal lumen / azurophil granule lumen / lysosome / hydrolase activity / signaling receptor binding / Neutrophil degranulation / Golgi apparatus / protein homodimerization activity / extracellular exosome / extracellular region / cytoplasm Similarity search - Function | |||||||||
Biological species | Homo sapiens (human) | |||||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.01 Å | |||||||||
Authors | Li, H.Y. / Huang, K.F. / Ko, T.P. / Cheng, W.C. | |||||||||
Funding support | Taiwan, 2items
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Citation | Journal: Jacs Au / Year: 2024 Title: Mechanistic Insights into Dibasic Iminosugars as pH-Selective Pharmacological Chaperones to Stabilize Human alpha-Galactosidase. Authors: Li, H.Y. / Lin, H.Y. / Chang, S.K. / Chiu, Y.T. / Hou, C.C. / Ko, T.P. / Huang, K.F. / Niu, D.M. / Cheng, W.C. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 8k7j.cif.gz | 416.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb8k7j.ent.gz | 280.2 KB | Display | PDB format |
PDBx/mmJSON format | 8k7j.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 8k7j_validation.pdf.gz | 2.5 MB | Display | wwPDB validaton report |
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Full document | 8k7j_full_validation.pdf.gz | 2.5 MB | Display | |
Data in XML | 8k7j_validation.xml.gz | 38.5 KB | Display | |
Data in CIF | 8k7j_validation.cif.gz | 57.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/k7/8k7j ftp://data.pdbj.org/pub/pdb/validation_reports/k7/8k7j | HTTPS FTP |
-Related structure data
Related structure data | 8k7dC 8k7eC 8k7fC 8k7gC 8k7hC 8k7iC 8k7kC 8k7lC 1r47S S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Components on special symmetry positions |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: ens_1
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