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Yorodumi- PDB-8iq0: Crystal structure of hydrogen sulfide-bound superoxide dismutase ... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 8iq0 | ||||||
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| Title | Crystal structure of hydrogen sulfide-bound superoxide dismutase in oxidized state | ||||||
Components | Superoxide dismutase [Cu-Zn] | ||||||
Keywords | OXIDOREDUCTASE / dimer | ||||||
| Function / homology | Function and homology informationPlatelet degranulation / Detoxification of Reactive Oxygen Species / positive regulation of catalytic activity / neurofilament cytoskeleton organization / protein phosphatase 2B binding / relaxation of vascular associated smooth muscle / response to superoxide / peripheral nervous system myelin maintenance / retina homeostasis / auditory receptor cell stereocilium organization ...Platelet degranulation / Detoxification of Reactive Oxygen Species / positive regulation of catalytic activity / neurofilament cytoskeleton organization / protein phosphatase 2B binding / relaxation of vascular associated smooth muscle / response to superoxide / peripheral nervous system myelin maintenance / retina homeostasis / auditory receptor cell stereocilium organization / hydrogen peroxide biosynthetic process / myeloid cell homeostasis / superoxide metabolic process / muscle cell cellular homeostasis / superoxide dismutase / heart contraction / superoxide dismutase activity / transmission of nerve impulse / regulation of multicellular organism growth / response to axon injury / ovarian follicle development / embryo implantation / glutathione metabolic process / dendrite cytoplasm / removal of superoxide radicals / reactive oxygen species metabolic process / positive regulation of cytokine production / regulation of mitochondrial membrane potential / locomotory behavior / response to hydrogen peroxide / sensory perception of sound / regulation of blood pressure / protein polyubiquitination / ubiquitin-protein transferase activity / peroxisome / protein-folding chaperone binding / response to heat / cytoplasmic vesicle / response to ethanol / spermatogenesis / proteasome-mediated ubiquitin-dependent protein catabolic process / negative regulation of neuron apoptotic process / intracellular iron ion homeostasis / positive regulation of MAPK cascade / copper ion binding / neuronal cell body / protein homodimerization activity / protein-containing complex / mitochondrion / zinc ion binding / nucleus / cytoplasm / cytosol Similarity search - Function | ||||||
| Biological species | ![]() | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 1.88 Å | ||||||
Authors | Zhou, J.H. / Huang, W.X. / Cheng, R.X. / Zhang, P.J. / Zhu, Y.C. | ||||||
| Funding support | China, 1items
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Citation | Journal: Cell Rep / Year: 2023Title: Hydrogen sulfide functions as a micro-modulator bound at the copper active site of Cu/Zn-SOD to regulate the catalytic activity of the enzyme. Authors: Wu, D.D. / Jin, S. / Cheng, R.X. / Cai, W.J. / Xue, W.L. / Zhang, Q.Q. / Yang, L.J. / Zhu, Q. / Li, M.Y. / Lin, G. / Wang, Y.Z. / Mu, X.P. / Wang, Y. / Zhang, I.Y. / Zhang, Q. / Chen, Y. / ...Authors: Wu, D.D. / Jin, S. / Cheng, R.X. / Cai, W.J. / Xue, W.L. / Zhang, Q.Q. / Yang, L.J. / Zhu, Q. / Li, M.Y. / Lin, G. / Wang, Y.Z. / Mu, X.P. / Wang, Y. / Zhang, I.Y. / Zhang, Q. / Chen, Y. / Cai, S.Y. / Tan, B. / Li, Y. / Chen, Y.Q. / Zhang, P.J. / Sun, C. / Yin, Y. / Wang, M.J. / Zhu, Y.Z. / Tao, B.B. / Zhou, J.H. / Huang, W.X. / Zhu, Y.C. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 8iq0.cif.gz | 986.2 KB | Display | PDBx/mmCIF format |
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| PDB format | pdb8iq0.ent.gz | 737.9 KB | Display | PDB format |
| PDBx/mmJSON format | 8iq0.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 8iq0_validation.pdf.gz | 952.2 KB | Display | wwPDB validaton report |
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| Full document | 8iq0_full_validation.pdf.gz | 964.8 KB | Display | |
| Data in XML | 8iq0_validation.xml.gz | 97.9 KB | Display | |
| Data in CIF | 8iq0_validation.cif.gz | 140.6 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/iq/8iq0 ftp://data.pdbj.org/pub/pdb/validation_reports/iq/8iq0 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 8iq1C C: citing same article ( |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Assembly
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| Noncrystallographic symmetry (NCS) | NCS domain:
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X-RAY DIFFRACTION
China, 1items
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