PDB-8h5a: Crystal structure of YhaJ effector binding domain (ligand-bound)

IDまたはキーワード:

登録情報

データベース: PDB / ID: 8h5a

タイトル

Crystal structure of YhaJ effector binding domain (ligand-bound)

要素

HTH-type transcriptional regulator YhaJ

キーワード

TRANSCRIPTION

機能・相同性

機能・相同性情報

DNA-binding transcription factor activity / DNA binding
類似検索 - 分子機能

生物種

Escherichia coli K-12 (大腸菌)

手法

X線回折 /

シンクロトロン /

分子置換 / 解像度: 2.803 Å

データ登録者

Kim, M. / Ryu, S.E.

資金援助

韓国, 1件

引用

ジャーナル: Iscience / 年: 2023
タイトル: Structural basis of transcription factor YhaJ for DNT detection.
著者: Kim, M. / Kang, R. / Jeon, T.J. / Ryu, S.E.

履歴

登録	2022年10月12日	登録サイト: PDBJ / 処理サイト: PDBJ
改定 1.0	2023年10月25日	Provider: repository / タイプ: Initial release
改定 1.1	2024年3月6日	Group: Source and taxonomy / カテゴリ: entity_src_gen Item: _entity_src_gen.gene_src_strain / _entity_src_gen.pdbx_gene_src_scientific_name ..._entity_src_gen.gene_src_strain / _entity_src_gen.pdbx_gene_src_scientific_name / _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id / _entity_src_gen.pdbx_host_org_scientific_name / _entity_src_gen.pdbx_host_org_strain

構造ビューア	分子: MolmilJmol/JSmol

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ダウンロード

PDBx/mmCIF形式	8h5a.cif.gz	656.4 KB	表示	PDBx/mmCIF形式
PDB形式	pdb8h5a.ent.gz	526.7 KB	表示	PDB形式
PDBx/mmJSON形式	8h5a.json.gz		ツリー表示	PDBx/mmJSON形式
その他	その他のダウンロード

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検証レポート

文書・要旨	8h5a_validation.pdf.gz	12 MB	表示	wwPDB検証レポート
文書・詳細版	8h5a_full_validation.pdf.gz	12.1 MB	表示
XML形式データ	8h5a_validation.xml.gz	127.5 KB	表示
CIF形式データ	8h5a_validation.cif.gz	165.4 KB	表示
アーカイブディレクトリ	https://data.pdbj.org/pub/pdb/validation_reports/h5/8h5a ftp://data.pdbj.org/pub/pdb/validation_reports/h5/8h5a	HTTPS FTP

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関連構造データ

関連構造データ	8h58C C: 同じ文献を引用 (文献)
類似構造データ	類似検索 - 機能・相同性F&H 検索類似検索 - 機能F&H 検索類似検索 - 相同性F&H 検索

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リンク

PDBのページ	PDBj / wwPDB / NCBI

登録構造単位

A: HTH-type transcriptional regulator YhaJ

B: HTH-type transcriptional regulator YhaJ

C: HTH-type transcriptional regulator YhaJ

D: HTH-type transcriptional regulator YhaJ

E: HTH-type transcriptional regulator YhaJ

F: HTH-type transcriptional regulator YhaJ

G: HTH-type transcriptional regulator YhaJ

H: HTH-type transcriptional regulator YhaJ

I: HTH-type transcriptional regulator YhaJ

J: HTH-type transcriptional regulator YhaJ

K: HTH-type transcriptional regulator YhaJ

L: HTH-type transcriptional regulator YhaJ

M: HTH-type transcriptional regulator YhaJ

N: HTH-type transcriptional regulator YhaJ

O: HTH-type transcriptional regulator YhaJ

P: HTH-type transcriptional regulator YhaJ

ヘテロ分子

377 kDa, 16 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

1

A: HTH-type transcriptional regulator YhaJ

B: HTH-type transcriptional regulator YhaJ

ヘテロ分子

登録者・ソフトウェアが定義した集合体
根拠: gel filtration
47 kDa, 2 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

2

C: HTH-type transcriptional regulator YhaJ

D: HTH-type transcriptional regulator YhaJ

ヘテロ分子

登録者・ソフトウェアが定義した集合体
47.2 kDa, 2 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

3

E: HTH-type transcriptional regulator YhaJ

F: HTH-type transcriptional regulator YhaJ

ヘテロ分子

登録者・ソフトウェアが定義した集合体
47 kDa, 2 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

4

G: HTH-type transcriptional regulator YhaJ

H: HTH-type transcriptional regulator YhaJ

ヘテロ分子

登録者・ソフトウェアが定義した集合体
47 kDa, 2 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

5

I: HTH-type transcriptional regulator YhaJ

J: HTH-type transcriptional regulator YhaJ

ヘテロ分子

登録者・ソフトウェアが定義した集合体
47 kDa, 2 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

6

K: HTH-type transcriptional regulator YhaJ

L: HTH-type transcriptional regulator YhaJ

ヘテロ分子

登録者・ソフトウェアが定義した集合体
47.2 kDa, 2 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

7

M: HTH-type transcriptional regulator YhaJ

N: HTH-type transcriptional regulator YhaJ

ヘテロ分子

登録者・ソフトウェアが定義した集合体
47 kDa, 2 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

8

O: HTH-type transcriptional regulator YhaJ

P: HTH-type transcriptional regulator YhaJ

ヘテロ分子

登録者・ソフトウェアが定義した集合体
47 kDa, 2 ポリマー
Omokage検索でこの集合体の類似形状データを探す (詳細)

単位格子

Length a, b, c (Å)	215.745, 215.745, 264.158
Angle α, β, γ (deg.)	90.000, 90.000, 120.000
Int Tables number	146
Space group name H-M	H3

非結晶学的対称性 (NCS)

NCSドメイン:
NCSドメイン領域:

Dom-ID	Component-ID	Ens-ID	Beg auth comp-ID	Beg label comp-ID	End auth comp-ID	End label comp-ID	Auth asym-ID	Label asym-ID	Auth seq-ID	Label seq-ID
1	1	1	THR	THR	PHE	PHE	A	A	97 - 295	6 - 204
2	2	1	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
3	3	2	THR	THR	LYS	LYS	A	A	97 - 298	6 - 207
4	4	2	THR	THR	LYS	LYS	C	C	97 - 298	6 - 207
5	5	3	THR	THR	ASN	ASN	A	A	97 - 296	6 - 205
6	6	3	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
7	7	4	THR	THR	LYS	LYS	A	A	97 - 298	6 - 207
8	8	4	THR	THR	LYS	LYS	E	E	97 - 298	6 - 207
9	9	5	THR	THR	GLY	GLY	A	A	97 - 297	6 - 206
10	10	5	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
11	11	6	THR	THR	LYS	LYS	A	A	97 - 298	6 - 207
12	12	6	THR	THR	LYS	LYS	G	G	97 - 298	6 - 207
13	13	7	THR	THR	ASN	ASN	A	A	97 - 296	6 - 205
14	14	7	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
15	15	8	THR	THR	LYS	LYS	A	A	97 - 298	6 - 207
16	16	8	THR	THR	LYS	LYS	I	I	97 - 298	6 - 207
17	17	9	THR	THR	GLY	GLY	A	A	97 - 297	6 - 206
18	18	9	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
19	19	10	THR	THR	LYS	LYS	A	A	97 - 298	6 - 207
20	20	10	THR	THR	LYS	LYS	K	K	97 - 298	6 - 207
21	21	11	THR	THR	ASN	ASN	A	A	97 - 296	6 - 205
22	22	11	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
23	23	12	THR	THR	LYS	LYS	A	A	97 - 298	6 - 207
24	24	12	THR	THR	LYS	LYS	M	M	97 - 298	6 - 207
25	25	13	THR	THR	ASN	ASN	A	A	97 - 296	6 - 205
26	26	13	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
27	27	14	THR	THR	LYS	LYS	A	A	97 - 298	6 - 207
28	28	14	THR	THR	LYS	LYS	O	O	97 - 298	6 - 207
29	29	15	THR	THR	ASN	ASN	A	A	97 - 296	6 - 205
30	30	15	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205
31	31	16	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
32	32	16	THR	THR	PHE	PHE	C	C	97 - 295	6 - 204
33	33	17	MET	MET	PHE	PHE	B	B	95 - 295	4 - 204
34	34	17	MET	MET	PHE	PHE	D	D	95 - 295	4 - 204
35	35	18	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
36	36	18	THR	THR	PHE	PHE	E	E	97 - 295	6 - 204
37	37	19	MET	MET	PHE	PHE	B	B	95 - 295	4 - 204
38	38	19	MET	MET	PHE	PHE	F	F	95 - 295	4 - 204
39	39	20	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
40	40	20	THR	THR	PHE	PHE	G	G	97 - 295	6 - 204
41	41	21	MET	MET	PHE	PHE	B	B	95 - 295	4 - 204
42	42	21	MET	MET	PHE	PHE	H	H	95 - 295	4 - 204
43	43	22	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
44	44	22	THR	THR	PHE	PHE	I	I	97 - 295	6 - 204
45	45	23	MET	MET	ASN	ASN	B	B	95 - 296	4 - 205
46	46	23	MET	MET	ASN	ASN	J	J	95 - 296	4 - 205
47	47	24	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
48	48	24	THR	THR	PHE	PHE	K	K	97 - 295	6 - 204
49	49	25	MET	MET	ASN	ASN	B	B	95 - 296	4 - 205
50	50	25	MET	MET	ASN	ASN	L	L	95 - 296	4 - 205
51	51	26	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
52	52	26	THR	THR	PHE	PHE	M	M	97 - 295	6 - 204
53	53	27	MET	MET	PHE	PHE	B	B	95 - 295	4 - 204
54	54	27	MET	MET	PHE	PHE	N	N	95 - 295	4 - 204
55	55	28	THR	THR	PHE	PHE	B	B	97 - 295	6 - 204
56	56	28	THR	THR	PHE	PHE	O	O	97 - 295	6 - 204
57	57	29	MET	MET	PHE	PHE	B	B	95 - 295	4 - 204
58	58	29	MET	MET	PHE	PHE	P	P	95 - 295	4 - 204
59	59	30	THR	THR	ASN	ASN	C	C	97 - 296	6 - 205
60	60	30	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
61	61	31	THR	THR	LYS	LYS	C	C	97 - 298	6 - 207
62	62	31	THR	THR	LYS	LYS	E	E	97 - 298	6 - 207
63	63	32	THR	THR	GLY	GLY	C	C	97 - 297	6 - 206
64	64	32	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
65	65	33	THR	THR	LYS	LYS	C	C	97 - 298	6 - 207
66	66	33	THR	THR	LYS	LYS	G	G	97 - 298	6 - 207
67	67	34	THR	THR	ASN	ASN	C	C	97 - 296	6 - 205
68	68	34	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
69	69	35	THR	THR	LYS	LYS	C	C	97 - 298	6 - 207
70	70	35	THR	THR	LYS	LYS	I	I	97 - 298	6 - 207
71	71	36	THR	THR	GLY	GLY	C	C	97 - 297	6 - 206
72	72	36	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
73	73	37	THR	THR	LYS	LYS	C	C	97 - 298	6 - 207
74	74	37	THR	THR	LYS	LYS	K	K	97 - 298	6 - 207
75	75	38	THR	THR	ASN	ASN	C	C	97 - 296	6 - 205
76	76	38	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
77	77	39	THR	THR	LYS	LYS	C	C	97 - 298	6 - 207
78	78	39	THR	THR	LYS	LYS	M	M	97 - 298	6 - 207
79	79	40	THR	THR	ASN	ASN	C	C	97 - 296	6 - 205
80	80	40	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
81	81	41	THR	THR	LYS	LYS	C	C	97 - 298	6 - 207
82	82	41	THR	THR	LYS	LYS	O	O	97 - 298	6 - 207
83	83	42	THR	THR	ASN	ASN	C	C	97 - 296	6 - 205
84	84	42	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205
85	85	43	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
86	86	43	THR	THR	ASN	ASN	E	E	97 - 296	6 - 205
87	87	44	MET	MET	ASN	ASN	D	D	95 - 296	4 - 205
88	88	44	MET	MET	ASN	ASN	F	F	95 - 296	4 - 205
89	89	45	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
90	90	45	THR	THR	ASN	ASN	G	G	97 - 296	6 - 205
91	91	46	MET	MET	GLY	GLY	D	D	95 - 297	4 - 206
92	92	46	MET	MET	GLY	GLY	H	H	95 - 297	4 - 206
93	93	47	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
94	94	47	THR	THR	ASN	ASN	I	I	97 - 296	6 - 205
95	95	48	MET	MET	GLY	GLY	D	D	95 - 297	4 - 206
96	96	48	MET	MET	GLY	GLY	J	J	95 - 297	4 - 206
97	97	49	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
98	98	49	THR	THR	ASN	ASN	K	K	97 - 296	6 - 205
99	99	50	MET	MET	GLY	GLY	D	D	95 - 297	4 - 206
100	100	50	MET	MET	GLY	GLY	L	L	95 - 297	4 - 206
101	101	51	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
102	102	51	THR	THR	ASN	ASN	M	M	97 - 296	6 - 205
103	103	52	MET	MET	GLY	GLY	D	D	95 - 297	4 - 206
104	104	52	MET	MET	GLY	GLY	N	N	95 - 297	4 - 206
105	105	53	THR	THR	ASN	ASN	D	D	97 - 296	6 - 205
106	106	53	THR	THR	ASN	ASN	O	O	97 - 296	6 - 205
107	107	54	MET	MET	GLY	GLY	D	D	95 - 297	4 - 206
108	108	54	MET	MET	GLY	GLY	P	P	95 - 297	4 - 206
109	109	55	THR	THR	GLY	GLY	E	E	97 - 297	6 - 206
110	110	55	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
111	111	56	THR	THR	LYS	LYS	E	E	97 - 298	6 - 207
112	112	56	THR	THR	LYS	LYS	G	G	97 - 298	6 - 207
113	113	57	THR	THR	ASN	ASN	E	E	97 - 296	6 - 205
114	114	57	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
115	115	58	THR	THR	LYS	LYS	E	E	97 - 298	6 - 207
116	116	58	THR	THR	LYS	LYS	I	I	97 - 298	6 - 207
117	117	59	THR	THR	GLY	GLY	E	E	97 - 297	6 - 206
118	118	59	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
119	119	60	THR	THR	LYS	LYS	E	E	97 - 298	6 - 207
120	120	60	THR	THR	LYS	LYS	K	K	97 - 298	6 - 207
121	121	61	THR	THR	ASN	ASN	E	E	97 - 296	6 - 205
122	122	61	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
123	123	62	THR	THR	LYS	LYS	E	E	97 - 298	6 - 207
124	124	62	THR	THR	LYS	LYS	M	M	97 - 298	6 - 207
125	125	63	THR	THR	ASN	ASN	E	E	97 - 296	6 - 205
126	126	63	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
127	127	64	THR	THR	LYS	LYS	E	E	97 - 298	6 - 207
128	128	64	THR	THR	LYS	LYS	O	O	97 - 298	6 - 207
129	129	65	THR	THR	ASN	ASN	E	E	97 - 296	6 - 205
130	130	65	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205
131	131	66	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
132	132	66	THR	THR	GLY	GLY	G	G	97 - 297	6 - 206
133	133	67	MET	MET	ASN	ASN	F	F	95 - 296	4 - 205
134	134	67	MET	MET	ASN	ASN	H	H	95 - 296	4 - 205
135	135	68	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
136	136	68	THR	THR	GLY	GLY	I	I	97 - 297	6 - 206
137	137	69	MET	MET	GLY	GLY	F	F	95 - 297	4 - 206
138	138	69	MET	MET	GLY	GLY	J	J	95 - 297	4 - 206
139	139	70	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
140	140	70	THR	THR	GLY	GLY	K	K	97 - 297	6 - 206
141	141	71	MET	MET	GLY	GLY	F	F	95 - 297	4 - 206
142	142	71	MET	MET	GLY	GLY	L	L	95 - 297	4 - 206
143	143	72	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
144	144	72	THR	THR	GLY	GLY	M	M	97 - 297	6 - 206
145	145	73	MET	MET	ASN	ASN	F	F	95 - 296	4 - 205
146	146	73	MET	MET	ASN	ASN	N	N	95 - 296	4 - 205
147	147	74	THR	THR	GLY	GLY	F	F	97 - 297	6 - 206
148	148	74	THR	THR	GLY	GLY	O	O	97 - 297	6 - 206
149	149	75	MET	MET	ASN	ASN	F	F	95 - 296	4 - 205
150	150	75	MET	MET	ASN	ASN	P	P	95 - 296	4 - 205
151	151	76	THR	THR	ASN	ASN	G	G	97 - 296	6 - 205
152	152	76	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
153	153	77	THR	THR	LYS	LYS	G	G	97 - 298	6 - 207
154	154	77	THR	THR	LYS	LYS	I	I	97 - 298	6 - 207
155	155	78	THR	THR	GLY	GLY	G	G	97 - 297	6 - 206
156	156	78	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
157	157	79	THR	THR	LYS	LYS	G	G	97 - 298	6 - 207
158	158	79	THR	THR	LYS	LYS	K	K	97 - 298	6 - 207
159	159	80	THR	THR	ASN	ASN	G	G	97 - 296	6 - 205
160	160	80	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
161	161	81	THR	THR	LYS	LYS	G	G	97 - 298	6 - 207
162	162	81	THR	THR	LYS	LYS	M	M	97 - 298	6 - 207
163	163	82	THR	THR	ASN	ASN	G	G	97 - 296	6 - 205
164	164	82	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
165	165	83	THR	THR	LYS	LYS	G	G	97 - 298	6 - 207
166	166	83	THR	THR	LYS	LYS	O	O	97 - 298	6 - 207
167	167	84	THR	THR	ASN	ASN	G	G	97 - 296	6 - 205
168	168	84	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205
169	169	85	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
170	170	85	THR	THR	ASN	ASN	I	I	97 - 296	6 - 205
171	171	86	MET	MET	GLY	GLY	H	H	95 - 297	4 - 206
172	172	86	MET	MET	GLY	GLY	J	J	95 - 297	4 - 206
173	173	87	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
174	174	87	THR	THR	ASN	ASN	K	K	97 - 296	6 - 205
175	175	88	MET	MET	GLY	GLY	H	H	95 - 297	4 - 206
176	176	88	MET	MET	GLY	GLY	L	L	95 - 297	4 - 206
177	177	89	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
178	178	89	THR	THR	ASN	ASN	M	M	97 - 296	6 - 205
179	179	90	MET	MET	GLY	GLY	H	H	95 - 297	4 - 206
180	180	90	MET	MET	GLY	GLY	N	N	95 - 297	4 - 206
181	181	91	THR	THR	ASN	ASN	H	H	97 - 296	6 - 205
182	182	91	THR	THR	ASN	ASN	O	O	97 - 296	6 - 205
183	183	92	MET	MET	GLY	GLY	H	H	95 - 297	4 - 206
184	184	92	MET	MET	GLY	GLY	P	P	95 - 297	4 - 206
185	185	93	THR	THR	GLY	GLY	I	I	97 - 297	6 - 206
186	186	93	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
187	187	94	THR	THR	LYS	LYS	I	I	97 - 298	6 - 207
188	188	94	THR	THR	LYS	LYS	K	K	97 - 298	6 - 207
189	189	95	THR	THR	ASN	ASN	I	I	97 - 296	6 - 205
190	190	95	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
191	191	96	THR	THR	LYS	LYS	I	I	97 - 298	6 - 207
192	192	96	THR	THR	LYS	LYS	M	M	97 - 298	6 - 207
193	193	97	THR	THR	ASN	ASN	I	I	97 - 296	6 - 205
194	194	97	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
195	195	98	THR	THR	LYS	LYS	I	I	97 - 298	6 - 207
196	196	98	THR	THR	LYS	LYS	O	O	97 - 298	6 - 207
197	197	99	THR	THR	ASN	ASN	I	I	97 - 296	6 - 205
198	198	99	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205
199	199	100	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
200	200	100	THR	THR	GLY	GLY	K	K	97 - 297	6 - 206
201	201	101	MET	MET	GLY	GLY	J	J	95 - 297	4 - 206
202	202	101	MET	MET	GLY	GLY	L	L	95 - 297	4 - 206
203	203	102	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
204	204	102	THR	THR	GLY	GLY	M	M	97 - 297	6 - 206
205	205	103	MET	MET	GLY	GLY	J	J	95 - 297	4 - 206
206	206	103	MET	MET	GLY	GLY	N	N	95 - 297	4 - 206
207	207	104	THR	THR	GLY	GLY	J	J	97 - 297	6 - 206
208	208	104	THR	THR	GLY	GLY	O	O	97 - 297	6 - 206
209	209	105	MET	MET	GLY	GLY	J	J	95 - 297	4 - 206
210	210	105	MET	MET	GLY	GLY	P	P	95 - 297	4 - 206
211	211	106	THR	THR	ASN	ASN	K	K	97 - 296	6 - 205
212	212	106	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
213	213	107	THR	THR	LYS	LYS	K	K	97 - 298	6 - 207
214	214	107	THR	THR	LYS	LYS	M	M	97 - 298	6 - 207
215	215	108	THR	THR	ASN	ASN	K	K	97 - 296	6 - 205
216	216	108	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
217	217	109	THR	THR	LYS	LYS	K	K	97 - 298	6 - 207
218	218	109	THR	THR	LYS	LYS	O	O	97 - 298	6 - 207
219	219	110	THR	THR	ASN	ASN	K	K	97 - 296	6 - 205
220	220	110	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205
221	221	111	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
222	222	111	THR	THR	ASN	ASN	M	M	97 - 296	6 - 205
223	223	112	MET	MET	GLY	GLY	L	L	95 - 297	4 - 206
224	224	112	MET	MET	GLY	GLY	N	N	95 - 297	4 - 206
225	225	113	THR	THR	ASN	ASN	L	L	97 - 296	6 - 205
226	226	113	THR	THR	ASN	ASN	O	O	97 - 296	6 - 205
227	227	114	MET	MET	GLY	GLY	L	L	95 - 297	4 - 206
228	228	114	MET	MET	GLY	GLY	P	P	95 - 297	4 - 206
229	229	115	THR	THR	ASN	ASN	M	M	97 - 296	6 - 205
230	230	115	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
231	231	116	THR	THR	LYS	LYS	M	M	97 - 298	6 - 207
232	232	116	THR	THR	LYS	LYS	O	O	97 - 298	6 - 207
233	233	117	THR	THR	ASN	ASN	M	M	97 - 296	6 - 205
234	234	117	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205
235	235	118	THR	THR	ASN	ASN	N	N	97 - 296	6 - 205
236	236	118	THR	THR	ASN	ASN	O	O	97 - 296	6 - 205
237	237	119	MET	MET	GLY	GLY	N	N	95 - 297	4 - 206
238	238	119	MET	MET	GLY	GLY	P	P	95 - 297	4 - 206
239	239	120	THR	THR	ASN	ASN	O	O	97 - 296	6 - 205
240	240	120	THR	THR	ASN	ASN	P	P	97 - 296	6 - 205

NCSアンサンブル:

ID	詳細
1	Local NCS retraints between domains: 1 2
2	Local NCS retraints between domains: 3 4
3	Local NCS retraints between domains: 5 6
4	Local NCS retraints between domains: 7 8
5	Local NCS retraints between domains: 9 10
6	Local NCS retraints between domains: 11 12
7	Local NCS retraints between domains: 13 14
8	Local NCS retraints between domains: 15 16
9	Local NCS retraints between domains: 17 18
10	Local NCS retraints between domains: 19 20
11	Local NCS retraints between domains: 21 22
12	Local NCS retraints between domains: 23 24
13	Local NCS retraints between domains: 25 26
14	Local NCS retraints between domains: 27 28
15	Local NCS retraints between domains: 29 30
16	Local NCS retraints between domains: 31 32
17	Local NCS retraints between domains: 33 34
18	Local NCS retraints between domains: 35 36
19	Local NCS retraints between domains: 37 38
20	Local NCS retraints between domains: 39 40
21	Local NCS retraints between domains: 41 42
22	Local NCS retraints between domains: 43 44
23	Local NCS retraints between domains: 45 46
24	Local NCS retraints between domains: 47 48
25	Local NCS retraints between domains: 49 50
26	Local NCS retraints between domains: 51 52
27	Local NCS retraints between domains: 53 54
28	Local NCS retraints between domains: 55 56
29	Local NCS retraints between domains: 57 58
30	Local NCS retraints between domains: 59 60
31	Local NCS retraints between domains: 61 62
32	Local NCS retraints between domains: 63 64
33	Local NCS retraints between domains: 65 66
34	Local NCS retraints between domains: 67 68
35	Local NCS retraints between domains: 69 70
36	Local NCS retraints between domains: 71 72
37	Local NCS retraints between domains: 73 74
38	Local NCS retraints between domains: 75 76
39	Local NCS retraints between domains: 77 78
40	Local NCS retraints between domains: 79 80
41	Local NCS retraints between domains: 81 82
42	Local NCS retraints between domains: 83 84
43	Local NCS retraints between domains: 85 86
44	Local NCS retraints between domains: 87 88
45	Local NCS retraints between domains: 89 90
46	Local NCS retraints between domains: 91 92
47	Local NCS retraints between domains: 93 94
48	Local NCS retraints between domains: 95 96
49	Local NCS retraints between domains: 97 98
50	Local NCS retraints between domains: 99 100
51	Local NCS retraints between domains: 101 102
52	Local NCS retraints between domains: 103 104
53	Local NCS retraints between domains: 105 106
54	Local NCS retraints between domains: 107 108
55	Local NCS retraints between domains: 109 110
56	Local NCS retraints between domains: 111 112
57	Local NCS retraints between domains: 113 114
58	Local NCS retraints between domains: 115 116
59	Local NCS retraints between domains: 117 118
60	Local NCS retraints between domains: 119 120
61	Local NCS retraints between domains: 121 122
62	Local NCS retraints between domains: 123 124
63	Local NCS retraints between domains: 125 126
64	Local NCS retraints between domains: 127 128
65	Local NCS retraints between domains: 129 130
66	Local NCS retraints between domains: 131 132
67	Local NCS retraints between domains: 133 134
68	Local NCS retraints between domains: 135 136
69	Local NCS retraints between domains: 137 138
70	Local NCS retraints between domains: 139 140
71	Local NCS retraints between domains: 141 142
72	Local NCS retraints between domains: 143 144
73	Local NCS retraints between domains: 145 146
74	Local NCS retraints between domains: 147 148
75	Local NCS retraints between domains: 149 150
76	Local NCS retraints between domains: 151 152
77	Local NCS retraints between domains: 153 154
78	Local NCS retraints between domains: 155 156
79	Local NCS retraints between domains: 157 158
80	Local NCS retraints between domains: 159 160
81	Local NCS retraints between domains: 161 162
82	Local NCS retraints between domains: 163 164
83	Local NCS retraints between domains: 165 166
84	Local NCS retraints between domains: 167 168
85	Local NCS retraints between domains: 169 170
86	Local NCS retraints between domains: 171 172
87	Local NCS retraints between domains: 173 174
88	Local NCS retraints between domains: 175 176
89	Local NCS retraints between domains: 177 178
90	Local NCS retraints between domains: 179 180
91	Local NCS retraints between domains: 181 182
92	Local NCS retraints between domains: 183 184
93	Local NCS retraints between domains: 185 186
94	Local NCS retraints between domains: 187 188
95	Local NCS retraints between domains: 189 190
96	Local NCS retraints between domains: 191 192
97	Local NCS retraints between domains: 193 194
98	Local NCS retraints between domains: 195 196
99	Local NCS retraints between domains: 197 198
100	Local NCS retraints between domains: 199 200
101	Local NCS retraints between domains: 201 202
102	Local NCS retraints between domains: 203 204
103	Local NCS retraints between domains: 205 206
104	Local NCS retraints between domains: 207 208
105	Local NCS retraints between domains: 209 210
106	Local NCS retraints between domains: 211 212
107	Local NCS retraints between domains: 213 214
108	Local NCS retraints between domains: 215 216
109	Local NCS retraints between domains: 217 218
110	Local NCS retraints between domains: 219 220
111	Local NCS retraints between domains: 221 222
112	Local NCS retraints between domains: 223 224
113	Local NCS retraints between domains: 225 226
114	Local NCS retraints between domains: 227 228
115	Local NCS retraints between domains: 229 230
116	Local NCS retraints between domains: 231 232
117	Local NCS retraints between domains: 233 234
118	Local NCS retraints between domains: 235 236
119	Local NCS retraints between domains: 237 238
120	Local NCS retraints between domains: 239 240

#1: タンパク質	HTH-type transcriptional regulator YhaJ 分子量: 23123.719 Da / 分子数: 16 / 由来タイプ: 組換発現 / 由来: (組換発現) Escherichia coli K-12 (大腸菌) / 株: K-12 / 遺伝子: yhaJ / 発現宿主: Escherichia coli DH5[alpha] (大腸菌) / 株 (発現宿主): DH5[alpha] / 参照: UniProt: P67661
#2: 化合物	... ChemComp-7DV / 2-methylbenzene-1,4-diol / 2-メチルヒドロキノン分子量: 124.137 Da / 分子数: 50 / 由来タイプ: 合成 / 式: C₇H₈O₂ / タイプ: SUBJECT OF INVESTIGATION
#3: 化合物	ChemComp-NA / SODIUM ION / ナトリウムカチオン分子量: 22.990 Da / 分子数: 16 / 由来タイプ: 合成 / 式: Na
#4: 水	ChemComp-HOH / water 分子量: 18.015 Da / 分子数: 71 / 由来タイプ: 天然 / 式: H₂O
研究の焦点であるリガンドがあるか	Y

-
実験

実験	手法: X線回折 / 使用した結晶の数: 1

-
試料調製

結晶	マシュー密度: 3.18 Å³/Da / 溶媒含有率: 61 %
結晶化	温度: 291 K / 手法: 蒸気拡散法, シッティングドロップ法 / pH: 7 / 詳細: 2.8M sodium acetate trihydrate pH 7.0

-
データ収集

回折

平均測定温度: 100 K / Serial crystal experiment: N

放射光源

由来:

シンクロトロン / サイト: PAL/PLS

/ ビームライン: 7A (6B, 6C1) / 波長: 0.97933 Å

検出器

タイプ: ADSC QUANTUM 210 / 検出器: CCD / 日付: 2022年3月24日

放射

プロトコル: SINGLE WAVELENGTH / 単色(M)・ラウエ(L): M / 散乱光タイプ: x-ray

放射波長

波長: 0.97933 Å / 相対比: 1

Reflection twin

タイプ	Crystal-ID	ID	Operator	Domain-ID	Fraction
pseudo-merohedral	1	1	H, K, L	1	0.1222
pseudo-merohedral	2	2	K, H, -L	2	0.1254
pseudo-merohedral	3	3	-K, -1/3H+1/3K-2/3L, 4/3H+2/3K-1/3L	3	0.1278
pseudo-merohedral	4	4	-1/3H-2/3K-2/3L, -2/3H-1/3K+2/3L, -2/3H+2/3K-1/3L	4	0.12
pseudo-merohedral	5	5	-1/3H+1/3K-2/3L, -K, -4/3H-2/3K+1/3L	5	0.1275
pseudo-merohedral	6	6	-H, 1/3H-1/3K+2/3L, 2/3H+4/3K+1/3L	6	0.1303
pseudo-merohedral	7	7	1/3H-1/3K+2/3L, -H, -2/3H-4/3K-1/3L	7	0.1249
pseudo-merohedral	8	8	-2/3H-1/3K+2/3L, -1/3H-2/3K-2/3L, 2/3H-2/3K+1/3L	8	0.1219

反射

解像度: 2.8→35.01 Å / Num. obs: 107524 / % possible obs: 95.5 % / 冗長度: 3.6 % / CC_1/2: 0.996 / R_merge(I) obs: 0.082 / Net I/σ(I): 10.1

反射シェル

解像度: 2.8→2.9 Å / 冗長度: 2.4 % / R_merge(I) obs: 0.391 / Mean I/σ(I) obs: 2.2 / Num. unique obs: 10131 / CC_1/2: 0.178 / % possible all: 89.9

-
解析

ソフトウェア

名称	バージョン	分類
REFMAC	5.8.0267	精密化
HKL-2000	v715	データ削減
HKL-2000	v715	データスケーリング
PHASER	2.8.3	位相決定

精密化

構造決定の手法:

分子置換
開始モデル: AF_AFP67660F1

解像度: 2.803→34.998 Å / Cor.coef. F_o:F_c: 0.939 / Cor.coef. F_o:F_c free: 0.904 / SU B: 7.504 / SU ML: 0.16 / 交差検証法: FREE R-VALUE / ESU R Free: 0.072 / 詳細: Hydrogens have not been used

	R_factor	反射数	%反射
R_free	0.232	5740	5.338 %
R_work	0.1838	101783	-
all	0.186	-	-
obs	-	107523	95.489 %

溶媒の処理

イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK BULK SOLVENT

原子変位パラメータ

B_iso mean: 66.276 Å²

	B_aniso -1	B_aniso -2	B_aniso -3
1-	-45.61 Å²	-0 Å²	-0 Å²
2-	-	-45.61 Å²	-0 Å²
3-	-	-	91.219 Å²

精密化ステップ

サイクル: LAST / 解像度: 2.803→34.998 Å

	タンパク質	核酸	リガンド	溶媒	全体
原子数	25300	0	466	71	25837

拘束条件

Refine-ID	タイプ	Dev ideal	Dev ideal target	数
X-RAY DIFFRACTION	r_bond_refined_d	0.01	0.012	26244
X-RAY DIFFRACTION	r_angle_refined_deg	1.698	1.666	35695
X-RAY DIFFRACTION	r_dihedral_angle_1_deg	6.713	5	3217
X-RAY DIFFRACTION	r_dihedral_angle_2_deg	30.344	20.786	1298
X-RAY DIFFRACTION	r_dihedral_angle_3_deg	20.408	15	4544
X-RAY DIFFRACTION	r_dihedral_angle_4_deg	25.028	15	239
X-RAY DIFFRACTION	r_chiral_restr	0.115	0.2	3572
X-RAY DIFFRACTION	r_gen_planes_refined	0.011	0.02	19553
X-RAY DIFFRACTION	r_nbd_refined	0.259	0.2	13605
X-RAY DIFFRACTION	r_nbtor_refined	0.313	0.2	18020
X-RAY DIFFRACTION	r_xyhbond_nbd_refined	0.214	0.2	756
X-RAY DIFFRACTION	r_metal_ion_refined	0.225	0.2	13
X-RAY DIFFRACTION	r_symmetry_nbd_refined	0.39	0.2	268
X-RAY DIFFRACTION	r_symmetry_xyhbond_nbd_refined	0.379	0.2	23
X-RAY DIFFRACTION	r_mcbond_it	7.957	6.682	12922
X-RAY DIFFRACTION	r_mcangle_it	11.394	9.999	16121
X-RAY DIFFRACTION	r_scbond_it	8.106	6.612	13322
X-RAY DIFFRACTION	r_scangle_it	10.867	9.881	19574
X-RAY DIFFRACTION	r_lrange_it	14.899	126.355	105394
X-RAY DIFFRACTION	r_ncsr_local_group_1	0.183	0.05	5425
X-RAY DIFFRACTION	r_ncsr_local_group_2	0.174	0.05	5632
X-RAY DIFFRACTION	r_ncsr_local_group_3	0.191	0.05	5370
X-RAY DIFFRACTION	r_ncsr_local_group_4	0.179	0.05	5539
X-RAY DIFFRACTION	r_ncsr_local_group_5	0.185	0.05	5446
X-RAY DIFFRACTION	r_ncsr_local_group_6	0.172	0.05	5604
X-RAY DIFFRACTION	r_ncsr_local_group_7	0.188	0.05	5498
X-RAY DIFFRACTION	r_ncsr_local_group_8	0.17	0.05	5674
X-RAY DIFFRACTION	r_ncsr_local_group_9	0.198	0.05	5221
X-RAY DIFFRACTION	r_ncsr_local_group_10	0.168	0.05	5682
X-RAY DIFFRACTION	r_ncsr_local_group_11	0.19	0.05	5323
X-RAY DIFFRACTION	r_ncsr_local_group_12	0.176	0.05	5623
X-RAY DIFFRACTION	r_ncsr_local_group_13	0.193	0.05	5415
X-RAY DIFFRACTION	r_ncsr_local_group_14	0.166	0.05	5661
X-RAY DIFFRACTION	r_ncsr_local_group_15	0.193	0.05	5415
X-RAY DIFFRACTION	r_ncsr_local_group_16	0.184	0.05	5434
X-RAY DIFFRACTION	r_ncsr_local_group_17	0.161	0.05	5587
X-RAY DIFFRACTION	r_ncsr_local_group_18	0.182	0.05	5413
X-RAY DIFFRACTION	r_ncsr_local_group_19	0.167	0.05	5673
X-RAY DIFFRACTION	r_ncsr_local_group_20	0.179	0.05	5465
X-RAY DIFFRACTION	r_ncsr_local_group_21	0.162	0.05	5671
X-RAY DIFFRACTION	r_ncsr_local_group_22	0.179	0.05	5518
X-RAY DIFFRACTION	r_ncsr_local_group_23	0.177	0.05	5538
X-RAY DIFFRACTION	r_ncsr_local_group_24	0.177	0.05	5476
X-RAY DIFFRACTION	r_ncsr_local_group_25	0.171	0.05	5572
X-RAY DIFFRACTION	r_ncsr_local_group_26	0.171	0.05	5490
X-RAY DIFFRACTION	r_ncsr_local_group_27	0.17	0.05	5665
X-RAY DIFFRACTION	r_ncsr_local_group_28	0.177	0.05	5506
X-RAY DIFFRACTION	r_ncsr_local_group_29	0.162	0.05	5657
X-RAY DIFFRACTION	r_ncsr_local_group_30	0.17	0.05	5471
X-RAY DIFFRACTION	r_ncsr_local_group_31	0.165	0.05	5655
X-RAY DIFFRACTION	r_ncsr_local_group_32	0.183	0.05	5466
X-RAY DIFFRACTION	r_ncsr_local_group_33	0.154	0.05	5708
X-RAY DIFFRACTION	r_ncsr_local_group_34	0.177	0.05	5479
X-RAY DIFFRACTION	r_ncsr_local_group_35	0.156	0.05	5753
X-RAY DIFFRACTION	r_ncsr_local_group_36	0.177	0.05	5273
X-RAY DIFFRACTION	r_ncsr_local_group_37	0.164	0.05	5750
X-RAY DIFFRACTION	r_ncsr_local_group_38	0.18	0.05	5336
X-RAY DIFFRACTION	r_ncsr_local_group_39	0.164	0.05	5629
X-RAY DIFFRACTION	r_ncsr_local_group_40	0.178	0.05	5535
X-RAY DIFFRACTION	r_ncsr_local_group_41	0.158	0.05	5703
X-RAY DIFFRACTION	r_ncsr_local_group_42	0.182	0.05	5477
X-RAY DIFFRACTION	r_ncsr_local_group_43	0.174	0.05	5459
X-RAY DIFFRACTION	r_ncsr_local_group_44	0.166	0.05	5614
X-RAY DIFFRACTION	r_ncsr_local_group_45	0.177	0.05	5460
X-RAY DIFFRACTION	r_ncsr_local_group_46	0.178	0.05	5575
X-RAY DIFFRACTION	r_ncsr_local_group_47	0.171	0.05	5500
X-RAY DIFFRACTION	r_ncsr_local_group_48	0.17	0.05	5436
X-RAY DIFFRACTION	r_ncsr_local_group_49	0.178	0.05	5467
X-RAY DIFFRACTION	r_ncsr_local_group_50	0.171	0.05	5522
X-RAY DIFFRACTION	r_ncsr_local_group_51	0.174	0.05	5434
X-RAY DIFFRACTION	r_ncsr_local_group_52	0.166	0.05	5714
X-RAY DIFFRACTION	r_ncsr_local_group_53	0.175	0.05	5471
X-RAY DIFFRACTION	r_ncsr_local_group_54	0.164	0.05	5601
X-RAY DIFFRACTION	r_ncsr_local_group_55	0.176	0.05	5499
X-RAY DIFFRACTION	r_ncsr_local_group_56	0.163	0.05	5649
X-RAY DIFFRACTION	r_ncsr_local_group_57	0.175	0.05	5462
X-RAY DIFFRACTION	r_ncsr_local_group_58	0.162	0.05	5668
X-RAY DIFFRACTION	r_ncsr_local_group_59	0.185	0.05	5270
X-RAY DIFFRACTION	r_ncsr_local_group_60	0.172	0.05	5614
X-RAY DIFFRACTION	r_ncsr_local_group_61	0.185	0.05	5263
X-RAY DIFFRACTION	r_ncsr_local_group_62	0.159	0.05	5682
X-RAY DIFFRACTION	r_ncsr_local_group_63	0.177	0.05	5504
X-RAY DIFFRACTION	r_ncsr_local_group_64	0.158	0.05	5678
X-RAY DIFFRACTION	r_ncsr_local_group_65	0.181	0.05	5447
X-RAY DIFFRACTION	r_ncsr_local_group_66	0.167	0.05	5531
X-RAY DIFFRACTION	r_ncsr_local_group_67	0.173	0.05	5661
X-RAY DIFFRACTION	r_ncsr_local_group_68	0.176	0.05	5529
X-RAY DIFFRACTION	r_ncsr_local_group_69	0.167	0.05	5573
X-RAY DIFFRACTION	r_ncsr_local_group_70	0.172	0.05	5492
X-RAY DIFFRACTION	r_ncsr_local_group_71	0.172	0.05	5613
X-RAY DIFFRACTION	r_ncsr_local_group_72	0.173	0.05	5514
X-RAY DIFFRACTION	r_ncsr_local_group_73	0.161	0.05	5802
X-RAY DIFFRACTION	r_ncsr_local_group_74	0.175	0.05	5527
X-RAY DIFFRACTION	r_ncsr_local_group_75	0.169	0.05	5653
X-RAY DIFFRACTION	r_ncsr_local_group_76	0.172	0.05	5468
X-RAY DIFFRACTION	r_ncsr_local_group_77	0.159	0.05	5702
X-RAY DIFFRACTION	r_ncsr_local_group_78	0.187	0.05	5342
X-RAY DIFFRACTION	r_ncsr_local_group_79	0.155	0.05	5691
X-RAY DIFFRACTION	r_ncsr_local_group_80	0.185	0.05	5318
X-RAY DIFFRACTION	r_ncsr_local_group_81	0.154	0.05	5682
X-RAY DIFFRACTION	r_ncsr_local_group_82	0.179	0.05	5511
X-RAY DIFFRACTION	r_ncsr_local_group_83	0.145	0.05	5772
X-RAY DIFFRACTION	r_ncsr_local_group_84	0.181	0.05	5445
X-RAY DIFFRACTION	r_ncsr_local_group_85	0.172	0.05	5590
X-RAY DIFFRACTION	r_ncsr_local_group_86	0.177	0.05	5499
X-RAY DIFFRACTION	r_ncsr_local_group_87	0.176	0.05	5495
X-RAY DIFFRACTION	r_ncsr_local_group_88	0.17	0.05	5574
X-RAY DIFFRACTION	r_ncsr_local_group_89	0.172	0.05	5504
X-RAY DIFFRACTION	r_ncsr_local_group_90	0.166	0.05	5727
X-RAY DIFFRACTION	r_ncsr_local_group_91	0.172	0.05	5542
X-RAY DIFFRACTION	r_ncsr_local_group_92	0.176	0.05	5669
X-RAY DIFFRACTION	r_ncsr_local_group_93	0.18	0.05	5336
X-RAY DIFFRACTION	r_ncsr_local_group_94	0.161	0.05	5738
X-RAY DIFFRACTION	r_ncsr_local_group_95	0.183	0.05	5443
X-RAY DIFFRACTION	r_ncsr_local_group_96	0.158	0.05	5707
X-RAY DIFFRACTION	r_ncsr_local_group_97	0.171	0.05	5561
X-RAY DIFFRACTION	r_ncsr_local_group_98	0.153	0.05	5752
X-RAY DIFFRACTION	r_ncsr_local_group_99	0.177	0.05	5520
X-RAY DIFFRACTION	r_ncsr_local_group_100	0.189	0.05	5258
X-RAY DIFFRACTION	r_ncsr_local_group_101	0.167	0.05	5531
X-RAY DIFFRACTION	r_ncsr_local_group_102	0.184	0.05	5311
X-RAY DIFFRACTION	r_ncsr_local_group_103	0.169	0.05	5541
X-RAY DIFFRACTION	r_ncsr_local_group_104	0.19	0.05	5295
X-RAY DIFFRACTION	r_ncsr_local_group_105	0.173	0.05	5457
X-RAY DIFFRACTION	r_ncsr_local_group_106	0.181	0.05	5364
X-RAY DIFFRACTION	r_ncsr_local_group_107	0.161	0.05	5660
X-RAY DIFFRACTION	r_ncsr_local_group_108	0.183	0.05	5512
X-RAY DIFFRACTION	r_ncsr_local_group_109	0.15	0.05	5754
X-RAY DIFFRACTION	r_ncsr_local_group_110	0.178	0.05	5481
X-RAY DIFFRACTION	r_ncsr_local_group_111	0.188	0.05	5323
X-RAY DIFFRACTION	r_ncsr_local_group_112	0.172	0.05	5661
X-RAY DIFFRACTION	r_ncsr_local_group_113	0.18	0.05	5407
X-RAY DIFFRACTION	r_ncsr_local_group_114	0.165	0.05	5553
X-RAY DIFFRACTION	r_ncsr_local_group_115	0.175	0.05	5491
X-RAY DIFFRACTION	r_ncsr_local_group_116	0.151	0.05	5697
X-RAY DIFFRACTION	r_ncsr_local_group_117	0.179	0.05	5495
X-RAY DIFFRACTION	r_ncsr_local_group_118	0.175	0.05	5521
X-RAY DIFFRACTION	r_ncsr_local_group_119	0.168	0.05	5696
X-RAY DIFFRACTION	r_ncsr_local_group_120	0.177	0.05	5496

Refine LS restraints NCS

Ens-ID	Dom-ID	Auth asym-ID	Refine-ID	タイプ	Rms dev position (Å)	Weight position
1	1	A	X-RAY DIFFRACTION	Local ncs	0.18276	0.05008
1	2	B	X-RAY DIFFRACTION	Local ncs	0.18276	0.05008
2	3	A	X-RAY DIFFRACTION	Local ncs	0.1736	0.05009
2	4	C	X-RAY DIFFRACTION	Local ncs	0.1736	0.05009
3	5	A	X-RAY DIFFRACTION	Local ncs	0.19073	0.05008
3	6	D	X-RAY DIFFRACTION	Local ncs	0.19073	0.05008
4	7	A	X-RAY DIFFRACTION	Local ncs	0.17948	0.05009
4	8	E	X-RAY DIFFRACTION	Local ncs	0.17948	0.05009
5	9	A	X-RAY DIFFRACTION	Local ncs	0.18527	0.05009
5	10	F	X-RAY DIFFRACTION	Local ncs	0.18527	0.05009
6	11	A	X-RAY DIFFRACTION	Local ncs	0.17195	0.05009
6	12	G	X-RAY DIFFRACTION	Local ncs	0.17195	0.05009
7	13	A	X-RAY DIFFRACTION	Local ncs	0.18767	0.05008
7	14	H	X-RAY DIFFRACTION	Local ncs	0.18767	0.05008
8	15	A	X-RAY DIFFRACTION	Local ncs	0.17044	0.05009
8	16	I	X-RAY DIFFRACTION	Local ncs	0.17044	0.05009
9	17	A	X-RAY DIFFRACTION	Local ncs	0.198	0.05008
9	18	J	X-RAY DIFFRACTION	Local ncs	0.198	0.05008
10	19	A	X-RAY DIFFRACTION	Local ncs	0.16793	0.05009
10	20	K	X-RAY DIFFRACTION	Local ncs	0.16793	0.05009
11	21	A	X-RAY DIFFRACTION	Local ncs	0.18978	0.05008
11	22	L	X-RAY DIFFRACTION	Local ncs	0.18978	0.05008
12	23	A	X-RAY DIFFRACTION	Local ncs	0.17589	0.05009
12	24	M	X-RAY DIFFRACTION	Local ncs	0.17589	0.05009
13	25	A	X-RAY DIFFRACTION	Local ncs	0.19295	0.05008
13	26	N	X-RAY DIFFRACTION	Local ncs	0.19295	0.05008
14	27	A	X-RAY DIFFRACTION	Local ncs	0.16553	0.05009
14	28	O	X-RAY DIFFRACTION	Local ncs	0.16553	0.05009
15	29	A	X-RAY DIFFRACTION	Local ncs	0.19337	0.05008
15	30	P	X-RAY DIFFRACTION	Local ncs	0.19337	0.05008
16	31	B	X-RAY DIFFRACTION	Local ncs	0.18351	0.05008
16	32	C	X-RAY DIFFRACTION	Local ncs	0.18351	0.05008
17	33	B	X-RAY DIFFRACTION	Local ncs	0.16062	0.05009
17	34	D	X-RAY DIFFRACTION	Local ncs	0.16062	0.05009
18	35	B	X-RAY DIFFRACTION	Local ncs	0.18187	0.05008
18	36	E	X-RAY DIFFRACTION	Local ncs	0.18187	0.05008
19	37	B	X-RAY DIFFRACTION	Local ncs	0.16658	0.05009
19	38	F	X-RAY DIFFRACTION	Local ncs	0.16658	0.05009
20	39	B	X-RAY DIFFRACTION	Local ncs	0.17913	0.05009
20	40	G	X-RAY DIFFRACTION	Local ncs	0.17913	0.05009
21	41	B	X-RAY DIFFRACTION	Local ncs	0.16177	0.05009
21	42	H	X-RAY DIFFRACTION	Local ncs	0.16177	0.05009
22	43	B	X-RAY DIFFRACTION	Local ncs	0.17946	0.05009
22	44	I	X-RAY DIFFRACTION	Local ncs	0.17946	0.05009
23	45	B	X-RAY DIFFRACTION	Local ncs	0.17748	0.05009
23	46	J	X-RAY DIFFRACTION	Local ncs	0.17748	0.05009
24	47	B	X-RAY DIFFRACTION	Local ncs	0.17688	0.05008
24	48	K	X-RAY DIFFRACTION	Local ncs	0.17688	0.05008
25	49	B	X-RAY DIFFRACTION	Local ncs	0.17082	0.05008
25	50	L	X-RAY DIFFRACTION	Local ncs	0.17082	0.05008
26	51	B	X-RAY DIFFRACTION	Local ncs	0.17124	0.05008
26	52	M	X-RAY DIFFRACTION	Local ncs	0.17124	0.05008
27	53	B	X-RAY DIFFRACTION	Local ncs	0.16982	0.05008
27	54	N	X-RAY DIFFRACTION	Local ncs	0.16982	0.05008
28	55	B	X-RAY DIFFRACTION	Local ncs	0.1774	0.05008
28	56	O	X-RAY DIFFRACTION	Local ncs	0.1774	0.05008
29	57	B	X-RAY DIFFRACTION	Local ncs	0.16157	0.05009
29	58	P	X-RAY DIFFRACTION	Local ncs	0.16157	0.05009
30	59	C	X-RAY DIFFRACTION	Local ncs	0.17037	0.05009
30	60	D	X-RAY DIFFRACTION	Local ncs	0.17037	0.05009
31	61	C	X-RAY DIFFRACTION	Local ncs	0.1651	0.05009
31	62	E	X-RAY DIFFRACTION	Local ncs	0.1651	0.05009
32	63	C	X-RAY DIFFRACTION	Local ncs	0.18251	0.05009
32	64	F	X-RAY DIFFRACTION	Local ncs	0.18251	0.05009
33	65	C	X-RAY DIFFRACTION	Local ncs	0.15432	0.05009
33	66	G	X-RAY DIFFRACTION	Local ncs	0.15432	0.05009
34	67	C	X-RAY DIFFRACTION	Local ncs	0.17686	0.05008
34	68	H	X-RAY DIFFRACTION	Local ncs	0.17686	0.05008
35	69	C	X-RAY DIFFRACTION	Local ncs	0.15624	0.05009
35	70	I	X-RAY DIFFRACTION	Local ncs	0.15624	0.05009
36	71	C	X-RAY DIFFRACTION	Local ncs	0.1775	0.05008
36	72	J	X-RAY DIFFRACTION	Local ncs	0.1775	0.05008
37	73	C	X-RAY DIFFRACTION	Local ncs	0.16393	0.05009
37	74	K	X-RAY DIFFRACTION	Local ncs	0.16393	0.05009
38	75	C	X-RAY DIFFRACTION	Local ncs	0.1798	0.05008
38	76	L	X-RAY DIFFRACTION	Local ncs	0.1798	0.05008
39	77	C	X-RAY DIFFRACTION	Local ncs	0.16354	0.05009
39	78	M	X-RAY DIFFRACTION	Local ncs	0.16354	0.05009
40	79	C	X-RAY DIFFRACTION	Local ncs	0.17809	0.05008
40	80	N	X-RAY DIFFRACTION	Local ncs	0.17809	0.05008
41	81	C	X-RAY DIFFRACTION	Local ncs	0.1576	0.05009
41	82	O	X-RAY DIFFRACTION	Local ncs	0.1576	0.05009
42	83	C	X-RAY DIFFRACTION	Local ncs	0.18166	0.05008
42	84	P	X-RAY DIFFRACTION	Local ncs	0.18166	0.05008
43	85	D	X-RAY DIFFRACTION	Local ncs	0.17378	0.05009
43	86	E	X-RAY DIFFRACTION	Local ncs	0.17378	0.05009
44	87	D	X-RAY DIFFRACTION	Local ncs	0.16565	0.05009
44	88	F	X-RAY DIFFRACTION	Local ncs	0.16565	0.05009
45	89	D	X-RAY DIFFRACTION	Local ncs	0.17739	0.05008
45	90	G	X-RAY DIFFRACTION	Local ncs	0.17739	0.05008
46	91	D	X-RAY DIFFRACTION	Local ncs	0.178	0.05008
46	92	H	X-RAY DIFFRACTION	Local ncs	0.178	0.05008
47	93	D	X-RAY DIFFRACTION	Local ncs	0.17079	0.05009
47	94	I	X-RAY DIFFRACTION	Local ncs	0.17079	0.05009
48	95	D	X-RAY DIFFRACTION	Local ncs	0.17017	0.05009
48	96	J	X-RAY DIFFRACTION	Local ncs	0.17017	0.05009
49	97	D	X-RAY DIFFRACTION	Local ncs	0.17765	0.05008
49	98	K	X-RAY DIFFRACTION	Local ncs	0.17765	0.05008
50	99	D	X-RAY DIFFRACTION	Local ncs	0.17118	0.05009
50	100	L	X-RAY DIFFRACTION	Local ncs	0.17118	0.05009
51	101	D	X-RAY DIFFRACTION	Local ncs	0.1735	0.05008
51	102	M	X-RAY DIFFRACTION	Local ncs	0.1735	0.05008
52	103	D	X-RAY DIFFRACTION	Local ncs	0.16591	0.05009
52	104	N	X-RAY DIFFRACTION	Local ncs	0.16591	0.05009
53	105	D	X-RAY DIFFRACTION	Local ncs	0.17452	0.05008
53	106	O	X-RAY DIFFRACTION	Local ncs	0.17452	0.05008
54	107	D	X-RAY DIFFRACTION	Local ncs	0.16352	0.05008
54	108	P	X-RAY DIFFRACTION	Local ncs	0.16352	0.05008
55	109	E	X-RAY DIFFRACTION	Local ncs	0.17635	0.05008
55	110	F	X-RAY DIFFRACTION	Local ncs	0.17635	0.05008
56	111	E	X-RAY DIFFRACTION	Local ncs	0.16255	0.05009
56	112	G	X-RAY DIFFRACTION	Local ncs	0.16255	0.05009
57	113	E	X-RAY DIFFRACTION	Local ncs	0.17485	0.05008
57	114	H	X-RAY DIFFRACTION	Local ncs	0.17485	0.05008
58	115	E	X-RAY DIFFRACTION	Local ncs	0.16195	0.05009
58	116	I	X-RAY DIFFRACTION	Local ncs	0.16195	0.05009
59	117	E	X-RAY DIFFRACTION	Local ncs	0.18545	0.05008
59	118	J	X-RAY DIFFRACTION	Local ncs	0.18545	0.05008
60	119	E	X-RAY DIFFRACTION	Local ncs	0.17193	0.05009
60	120	K	X-RAY DIFFRACTION	Local ncs	0.17193	0.05009
61	121	E	X-RAY DIFFRACTION	Local ncs	0.18504	0.05008
61	122	L	X-RAY DIFFRACTION	Local ncs	0.18504	0.05008
62	123	E	X-RAY DIFFRACTION	Local ncs	0.15948	0.05009
62	124	M	X-RAY DIFFRACTION	Local ncs	0.15948	0.05009
63	125	E	X-RAY DIFFRACTION	Local ncs	0.17711	0.05008
63	126	N	X-RAY DIFFRACTION	Local ncs	0.17711	0.05008
64	127	E	X-RAY DIFFRACTION	Local ncs	0.15827	0.05009
64	128	O	X-RAY DIFFRACTION	Local ncs	0.15827	0.05009
65	129	E	X-RAY DIFFRACTION	Local ncs	0.18099	0.05008
65	130	P	X-RAY DIFFRACTION	Local ncs	0.18099	0.05008
66	131	F	X-RAY DIFFRACTION	Local ncs	0.16731	0.05009
66	132	G	X-RAY DIFFRACTION	Local ncs	0.16731	0.05009
67	133	F	X-RAY DIFFRACTION	Local ncs	0.17324	0.05009
67	134	H	X-RAY DIFFRACTION	Local ncs	0.17324	0.05009
68	135	F	X-RAY DIFFRACTION	Local ncs	0.17594	0.05009
68	136	I	X-RAY DIFFRACTION	Local ncs	0.17594	0.05009
69	137	F	X-RAY DIFFRACTION	Local ncs	0.16728	0.05009
69	138	J	X-RAY DIFFRACTION	Local ncs	0.16728	0.05009
70	139	F	X-RAY DIFFRACTION	Local ncs	0.17178	0.05009
70	140	K	X-RAY DIFFRACTION	Local ncs	0.17178	0.05009
71	141	F	X-RAY DIFFRACTION	Local ncs	0.17247	0.05009
71	142	L	X-RAY DIFFRACTION	Local ncs	0.17247	0.05009
72	143	F	X-RAY DIFFRACTION	Local ncs	0.17287	0.05008
72	144	M	X-RAY DIFFRACTION	Local ncs	0.17287	0.05008
73	145	F	X-RAY DIFFRACTION	Local ncs	0.16082	0.05009
73	146	N	X-RAY DIFFRACTION	Local ncs	0.16082	0.05009
74	147	F	X-RAY DIFFRACTION	Local ncs	0.17526	0.05009
74	148	O	X-RAY DIFFRACTION	Local ncs	0.17526	0.05009
75	149	F	X-RAY DIFFRACTION	Local ncs	0.16857	0.05009
75	150	P	X-RAY DIFFRACTION	Local ncs	0.16857	0.05009
76	151	G	X-RAY DIFFRACTION	Local ncs	0.17241	0.05008
76	152	H	X-RAY DIFFRACTION	Local ncs	0.17241	0.05008
77	153	G	X-RAY DIFFRACTION	Local ncs	0.15909	0.05009
77	154	I	X-RAY DIFFRACTION	Local ncs	0.15909	0.05009
78	155	G	X-RAY DIFFRACTION	Local ncs	0.18703	0.05008
78	156	J	X-RAY DIFFRACTION	Local ncs	0.18703	0.05008
79	157	G	X-RAY DIFFRACTION	Local ncs	0.15533	0.05009
79	158	K	X-RAY DIFFRACTION	Local ncs	0.15533	0.05009
80	159	G	X-RAY DIFFRACTION	Local ncs	0.18545	0.05008
80	160	L	X-RAY DIFFRACTION	Local ncs	0.18545	0.05008
81	161	G	X-RAY DIFFRACTION	Local ncs	0.15415	0.05009
81	162	M	X-RAY DIFFRACTION	Local ncs	0.15415	0.05009
82	163	G	X-RAY DIFFRACTION	Local ncs	0.17855	0.05008
82	164	N	X-RAY DIFFRACTION	Local ncs	0.17855	0.05008
83	165	G	X-RAY DIFFRACTION	Local ncs	0.14476	0.05009
83	166	O	X-RAY DIFFRACTION	Local ncs	0.14476	0.05009
84	167	G	X-RAY DIFFRACTION	Local ncs	0.18103	0.05008
84	168	P	X-RAY DIFFRACTION	Local ncs	0.18103	0.05008
85	169	H	X-RAY DIFFRACTION	Local ncs	0.17161	0.05009
85	170	I	X-RAY DIFFRACTION	Local ncs	0.17161	0.05009
86	171	H	X-RAY DIFFRACTION	Local ncs	0.17744	0.05008
86	172	J	X-RAY DIFFRACTION	Local ncs	0.17744	0.05008
87	173	H	X-RAY DIFFRACTION	Local ncs	0.17624	0.05008
87	174	K	X-RAY DIFFRACTION	Local ncs	0.17624	0.05008
88	175	H	X-RAY DIFFRACTION	Local ncs	0.16991	0.05008
88	176	L	X-RAY DIFFRACTION	Local ncs	0.16991	0.05008
89	177	H	X-RAY DIFFRACTION	Local ncs	0.1725	0.05008
89	178	M	X-RAY DIFFRACTION	Local ncs	0.1725	0.05008
90	179	H	X-RAY DIFFRACTION	Local ncs	0.16617	0.05008
90	180	N	X-RAY DIFFRACTION	Local ncs	0.16617	0.05008
91	181	H	X-RAY DIFFRACTION	Local ncs	0.17218	0.05008
91	182	O	X-RAY DIFFRACTION	Local ncs	0.17218	0.05008
92	183	H	X-RAY DIFFRACTION	Local ncs	0.17578	0.05009
92	184	P	X-RAY DIFFRACTION	Local ncs	0.17578	0.05009
93	185	I	X-RAY DIFFRACTION	Local ncs	0.18019	0.05008
93	186	J	X-RAY DIFFRACTION	Local ncs	0.18019	0.05008
94	187	I	X-RAY DIFFRACTION	Local ncs	0.16064	0.05009
94	188	K	X-RAY DIFFRACTION	Local ncs	0.16064	0.05009
95	189	I	X-RAY DIFFRACTION	Local ncs	0.18267	0.05009
95	190	L	X-RAY DIFFRACTION	Local ncs	0.18267	0.05009
96	191	I	X-RAY DIFFRACTION	Local ncs	0.15777	0.05009
96	192	M	X-RAY DIFFRACTION	Local ncs	0.15777	0.05009
97	193	I	X-RAY DIFFRACTION	Local ncs	0.17072	0.05009
97	194	N	X-RAY DIFFRACTION	Local ncs	0.17072	0.05009
98	195	I	X-RAY DIFFRACTION	Local ncs	0.15306	0.05009
98	196	O	X-RAY DIFFRACTION	Local ncs	0.15306	0.05009
99	197	I	X-RAY DIFFRACTION	Local ncs	0.17654	0.05009
99	198	P	X-RAY DIFFRACTION	Local ncs	0.17654	0.05009
100	199	J	X-RAY DIFFRACTION	Local ncs	0.18888	0.05008
100	200	K	X-RAY DIFFRACTION	Local ncs	0.18888	0.05008
101	201	J	X-RAY DIFFRACTION	Local ncs	0.16722	0.05009
101	202	L	X-RAY DIFFRACTION	Local ncs	0.16722	0.05009
102	203	J	X-RAY DIFFRACTION	Local ncs	0.18387	0.05008
102	204	M	X-RAY DIFFRACTION	Local ncs	0.18387	0.05008
103	205	J	X-RAY DIFFRACTION	Local ncs	0.1692	0.05009
103	206	N	X-RAY DIFFRACTION	Local ncs	0.1692	0.05009
104	207	J	X-RAY DIFFRACTION	Local ncs	0.1903	0.05008
104	208	O	X-RAY DIFFRACTION	Local ncs	0.1903	0.05008
105	209	J	X-RAY DIFFRACTION	Local ncs	0.17276	0.05008
105	210	P	X-RAY DIFFRACTION	Local ncs	0.17276	0.05008
106	211	K	X-RAY DIFFRACTION	Local ncs	0.18094	0.05008
106	212	L	X-RAY DIFFRACTION	Local ncs	0.18094	0.05008
107	213	K	X-RAY DIFFRACTION	Local ncs	0.16105	0.05009
107	214	M	X-RAY DIFFRACTION	Local ncs	0.16105	0.05009
108	215	K	X-RAY DIFFRACTION	Local ncs	0.18269	0.05009
108	216	N	X-RAY DIFFRACTION	Local ncs	0.18269	0.05009
109	217	K	X-RAY DIFFRACTION	Local ncs	0.15041	0.05009
109	218	O	X-RAY DIFFRACTION	Local ncs	0.15041	0.05009
110	219	K	X-RAY DIFFRACTION	Local ncs	0.17772	0.05008
110	220	P	X-RAY DIFFRACTION	Local ncs	0.17772	0.05008
111	221	L	X-RAY DIFFRACTION	Local ncs	0.18785	0.05008
111	222	M	X-RAY DIFFRACTION	Local ncs	0.18785	0.05008
112	223	L	X-RAY DIFFRACTION	Local ncs	0.17153	0.05009
112	224	N	X-RAY DIFFRACTION	Local ncs	0.17153	0.05009
113	225	L	X-RAY DIFFRACTION	Local ncs	0.17999	0.05008
113	226	O	X-RAY DIFFRACTION	Local ncs	0.17999	0.05008
114	227	L	X-RAY DIFFRACTION	Local ncs	0.16537	0.05009
114	228	P	X-RAY DIFFRACTION	Local ncs	0.16537	0.05009
115	229	M	X-RAY DIFFRACTION	Local ncs	0.17474	0.05008
115	230	N	X-RAY DIFFRACTION	Local ncs	0.17474	0.05008
116	231	M	X-RAY DIFFRACTION	Local ncs	0.1515	0.05009
116	232	O	X-RAY DIFFRACTION	Local ncs	0.1515	0.05009
117	233	M	X-RAY DIFFRACTION	Local ncs	0.17868	0.05008
117	234	P	X-RAY DIFFRACTION	Local ncs	0.17868	0.05008
118	235	N	X-RAY DIFFRACTION	Local ncs	0.17548	0.05008
118	236	O	X-RAY DIFFRACTION	Local ncs	0.17548	0.05008
119	237	N	X-RAY DIFFRACTION	Local ncs	0.16795	0.05009
119	238	P	X-RAY DIFFRACTION	Local ncs	0.16795	0.05009
120	239	O	X-RAY DIFFRACTION	Local ncs	0.17666	0.05008
120	240	P	X-RAY DIFFRACTION	Local ncs	0.17666	0.05008

LS精密化シェル

解像度 (Å)	R_factor R_free	Num. reflection R_free	R_factor R_work	Num. reflection R_work	Refine-ID	% reflection obs (%)
2.803-2.875	0.336	376	0.267	7076	X-RAY DIFFRACTION	89.2028
2.875-2.954	0.289	406	0.224	7037	X-RAY DIFFRACTION	91.9343
2.954-3.04	0.312	339	0.204	7089	X-RAY DIFFRACTION	93.6342
3.04-3.133	0.256	310	0.181	6820	X-RAY DIFFRACTION	93.4714
3.133-3.236	0.262	325	0.18	6713	X-RAY DIFFRACTION	94.9669
3.236-3.35	0.263	383	0.185	6399	X-RAY DIFFRACTION	94.2206
3.35-3.476	0.203	368	0.165	6271	X-RAY DIFFRACTION	95.5802
3.476-3.618	0.289	295	0.167	6168	X-RAY DIFFRACTION	96.1327
3.618-3.779	0.253	378	0.181	5810	X-RAY DIFFRACTION	97.3568
3.779-3.963	0.233	291	0.17	5627	X-RAY DIFFRACTION	97.1119
3.963-4.177	0.185	291	0.17	5379	X-RAY DIFFRACTION	97.4897
4.177-4.43	0.229	351	0.165	5052	X-RAY DIFFRACTION	97.3163
4.43-4.736	0.173	328	0.151	4716	X-RAY DIFFRACTION	98.2087
4.736-5.115	0.216	231	0.162	4498	X-RAY DIFFRACTION	97.6461
5.115-5.602	0.173	257	0.185	4033	X-RAY DIFFRACTION	97.8112
5.602-6.263	0.258	233	0.205	3743	X-RAY DIFFRACTION	98.6845
6.263-7.229	0.304	166	0.192	3349	X-RAY DIFFRACTION	98.8192
7.229-8.849	0.179	239	0.171	2666	X-RAY DIFFRACTION	98.6083

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

-
2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

+
2020年3月5日: 新型コロナウイルスの構造データ

+
2019年1月31日: EMDBのIDの桁数の変更

+
2017年7月12日: PDB大規模アップデート

すべてのお知らせ

-
万見 (Yorodumi)

幾万の構造データを、幾万の視点から

万見(Yorodumi)は、EMDB/PDB/SASBDBなどの構造データを閲覧するためのページです。
EM Navigatorの詳細ページの後継、Omokage検索のフロントエンドも兼ねています。

関連情報:EMDB / PDB / SASBDB / 3つのデータバンクの比較 / 万見検索 / 2016年8月31日: 新しいEM Navigatorと万見 / 万見文献 / Jmol/JSmol / 機能・相同性情報 / 新しいEM Navigatorと万見の変更点

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万見について

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お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

-
2020年8月12日: 新型コロナ情報

+
2020年3月5日: 新型コロナウイルスの構造データ

+
2019年1月31日: EMDBのIDの桁数の変更

+
2017年7月12日: PDB大規模アップデート

-
万見 (Yorodumi)

-ムービー

-構造ビューア

+ビューアのログ

-このページ

-このウェブサイト

-オプション

+データを開く

-基本情報

-構造の表示

-ダウンロードとリンク

-ダウンロード

-検証レポート

-関連構造データ

-リンク

-集合体

-要素

-実験情報

-実験

-試料調製

-データ収集

-解析

+万見について

-お知らせ

-2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

-2020年8月12日: 新型コロナ情報

+2020年3月5日: 新型コロナウイルスの構造データ

+2019年1月31日: EMDBのIDの桁数の変更

+2017年7月12日: PDB大規模アップデート

-万見 (Yorodumi)

-
ムービー

-
構造ビューア

+
ビューアのログ

-
このページ

-
このウェブサイト

-
オプション

+
データを開く

-
基本情報

-
構造の表示

-
ダウンロードとリンク

-
ダウンロード

-
検証レポート

-
関連構造データ

-
リンク

-
集合体

-
要素

-
実験情報

-
実験

-
試料調製

-
データ収集

-
解析

+
万見について

-
お知らせ

-
2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

-
2020年8月12日: 新型コロナ情報

+
2020年3月5日: 新型コロナウイルスの構造データ

+
2019年1月31日: EMDBのIDの桁数の変更

+
2017年7月12日: PDB大規模アップデート

-
万見 (Yorodumi)