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- PDB-8fx9: Crystal strucutre of Mycobacterium tuberculosis Mycothiol-S-trans... -
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Open data
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Basic information
Entry | Database: PDB / ID: 8fx9 | ||||||
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Title | Crystal strucutre of Mycobacterium tuberculosis Mycothiol-S-transferase enzyme | ||||||
![]() | Mycothiol-S-transferase | ||||||
![]() | TRANSFERASE / Mycothiol / DinB superfamily / Apo / Metalloenzyme | ||||||
Function / homology | Protein of unknown function DUF664 / Protein of unknown function (DUF664) / DinB/YfiT-like putative metalloenzymes / Conserved protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Lindenberger, J.J. / Jayasinghe, Y.P. / Ronning, D.R. | ||||||
Funding support | ![]()
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![]() | ![]() Title: The Mycobacterium tuberculosis mycothiol S -transferase is divalent metal-dependent for mycothiol binding and transfer. Authors: Jayasinghe, Y.P. / Banco, M.T. / Lindenberger, J.J. / Favrot, L. / Palcekova, Z. / Jackson, M. / Manabe, S. / Ronning, D.R. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 53.1 KB | Display | ![]() |
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PDB format | ![]() | 35.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 815.2 KB | Display | ![]() |
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Full document | ![]() | 816.1 KB | Display | |
Data in XML | ![]() | 10.3 KB | Display | |
Data in CIF | ![]() | 15 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8f5vC C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 18789.979 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Chemical | ChemComp-CL / |
#3: Water | ChemComp-HOH / |
Has ligand of interest | Y |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.15 Å3/Da / Density % sol: 42.77 % |
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Crystal grow | Temperature: 289 K / Method: vapor diffusion, hanging drop Details: 0.1 M Tris pH 8.5, 0.2 M Magnesium chloride, 25% PEG 3350 |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: RAYONIX MX-225 / Detector: CCD / Date: Oct 10, 2014 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.97872 Å / Relative weight: 1 |
Reflection | Resolution: 1.36→50 Å / Num. obs: 31576 / % possible obs: 99.89 % / Redundancy: 12.3 % / CC1/2: 0.99 / Rmerge(I) obs: 0.074 / Net I/σ(I): 19.61 |
Reflection shell | Resolution: 1.36→1.41 Å / Rmerge(I) obs: 0.49 / Num. unique obs: 2669 / CC1/2: 0.94 |
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Processing
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Refinement | Method to determine structure: ![]()
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Solvent computation | Shrinkage radii: 0.9 Å / VDW probe radii: 1.1 Å / Solvent model: FLAT BULK SOLVENT MODEL | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.36→29.43 Å
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Refine LS restraints |
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LS refinement shell |
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