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- PDB-8f04: Structure of elevenin-Vc1 from venom of the Australian cone snail... -
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Open data
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Basic information
Entry | Database: PDB / ID: 8f04 | ||||||
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Title | Structure of elevenin-Vc1 from venom of the Australian cone snail Conus victoriae | ||||||
![]() | Elevenin-Vc1 | ||||||
![]() | HORMONE / Venom / Hormone-like | ||||||
Function / homology | neuropeptide signaling pathway / toxin activity / extracellular region / Elevenin-Vc1![]() | ||||||
Biological species | ![]() | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
![]() | Krishnarjuna, B. / Sunanda, P. / Norton, R.S. | ||||||
Funding support | ![]()
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![]() | ![]() Title: Characterisation of Elevenin-Vc1 from the Venom of Conus victoriae : A Structural Analogue of alpha-Conotoxins. Authors: Krishnarjuna, B. / Sunanda, P. / Seow, J. / Tae, H.S. / Robinson, S.D. / Belgi, A. / Robinson, A.J. / Safavi-Hemami, H. / Adams, D.J. / Norton, R.S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 109.7 KB | Display | ![]() |
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PDB format | ![]() | 77.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 488.1 KB | Display | ![]() |
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Full document | ![]() | 631.7 KB | Display | |
Data in XML | ![]() | 15.7 KB | Display | |
Data in CIF | ![]() | 21.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 2125.605 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Type: solution / Contents: 0.8 mM Elevenin-Cv1, 95% H2O/5% D2O / Details: 0.8 mM in water, pH 4.5 / Label: Elevenin-Cv1 / Solvent system: 95% H2O/5% D2O |
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Sample | Conc.: 0.8 mM / Component: Elevenin-Cv1 / Isotopic labeling: natural abundance |
Sample conditions | Details: 0.8 mM in water, pH 4.5 / Ionic strength: NA Not defined / Label: Elevenin-Cv1 / pH: 4.5 / Pressure: 1 atm / Temperature: 283 K |
-NMR measurement
NMR spectrometer | Type: Bruker Avance 600 / Manufacturer: Bruker / Model: Avance 600 / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 6 | |||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | |||||||||||||||||||||
NMR ensemble | Conformer selection criteria: all calculated structures submitted Conformers calculated total number: 20 / Conformers submitted total number: 20 |