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Yorodumi- PDB-8eb2: Structure of HLA-A*02:01 in complex with NY-ESO-1 peptide and PA2... -
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Open data
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Basic information
| Entry | Database: PDB / ID: 8eb2 | ||||||
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| Title | Structure of HLA-A*02:01 in complex with NY-ESO-1 peptide and PA2.1 Fab | ||||||
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Keywords | IMMUNE SYSTEM / Complex / Fab / antibody / MHC class I | ||||||
| Function / homology | Function and homology informationantigen processing and presentation of peptide antigen via MHC class I / negative regulation of receptor binding / early endosome lumen / Nef mediated downregulation of MHC class I complex cell surface expression / DAP12 interactions / transferrin transport / cellular response to iron ion / Endosomal/Vacuolar pathway / Antigen Presentation: Folding, assembly and peptide loading of class I MHC / peptide antigen assembly with MHC class II protein complex ...antigen processing and presentation of peptide antigen via MHC class I / negative regulation of receptor binding / early endosome lumen / Nef mediated downregulation of MHC class I complex cell surface expression / DAP12 interactions / transferrin transport / cellular response to iron ion / Endosomal/Vacuolar pathway / Antigen Presentation: Folding, assembly and peptide loading of class I MHC / peptide antigen assembly with MHC class II protein complex / lumenal side of endoplasmic reticulum membrane / cellular response to iron(III) ion / MHC class II protein complex / negative regulation of forebrain neuron differentiation / antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent / ER to Golgi transport vesicle membrane / peptide antigen assembly with MHC class I protein complex / regulation of iron ion transport / regulation of erythrocyte differentiation / HFE-transferrin receptor complex / response to molecule of bacterial origin / MHC class I peptide loading complex / T cell mediated cytotoxicity / positive regulation of T cell cytokine production / antigen processing and presentation of endogenous peptide antigen via MHC class I / antigen processing and presentation of exogenous peptide antigen via MHC class II / positive regulation of immune response / MHC class I protein complex / positive regulation of T cell activation / peptide antigen binding / positive regulation of receptor-mediated endocytosis / negative regulation of neurogenesis / cellular response to nicotine / positive regulation of T cell mediated cytotoxicity / multicellular organismal-level iron ion homeostasis / specific granule lumen / phagocytic vesicle membrane / recycling endosome membrane / Interferon gamma signaling / Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell / negative regulation of epithelial cell proliferation / MHC class II protein complex binding / Modulation by Mtb of host immune system / late endosome membrane / sensory perception of smell / positive regulation of cellular senescence / tertiary granule lumen / DAP12 signaling / T cell differentiation in thymus / negative regulation of neuron projection development / ER-Phagosome pathway / protein refolding / early endosome membrane / protein homotetramerization / amyloid fibril formation / intracellular iron ion homeostasis / learning or memory / immune response / endoplasmic reticulum lumen / Amyloid fiber formation / Golgi membrane / lysosomal membrane / external side of plasma membrane / focal adhesion / Neutrophil degranulation / SARS-CoV-2 activates/modulates innate and adaptive immune responses / structural molecule activity / cell surface / endoplasmic reticulum / Golgi apparatus / protein homodimerization activity / extracellular space / extracellular exosome / extracellular region / metal ion binding / identical protein binding / membrane / plasma membrane / cytosol Similarity search - Function | ||||||
| Biological species | Homo sapiens (human) | ||||||
| Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution: 2.9 Å | ||||||
Authors | Jette, C.A. / West, A.P. | ||||||
| Funding support | 1items
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Citation | Journal: Mol Ther Oncolytics / Year: 2022Title: HLA-A∗02-gated safety switch for cancer therapy has exquisite specificity for its allelic target antigen. Authors: Mock, J.Y. / Winters, A. / Riley, T.P. / Bruno, R. / Naradikian, M.S. / Sharma, S. / Jette, C.A. / Elshimali, R. / Gahrs, C. / Toledo-Warshaviak, D. / West Jr., A.P. / Kamb, A. / Hamburger, A.E. | ||||||
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Structure visualization
| Structure viewer | Molecule: Molmil Jmol/JSmol |
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Downloads & links
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Download
| PDBx/mmCIF format | 8eb2.cif.gz | 1.1 MB | Display | PDBx/mmCIF format |
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| PDB format | pdb8eb2.ent.gz | 812.2 KB | Display | PDB format |
| PDBx/mmJSON format | 8eb2.json.gz | Tree view | PDBx/mmJSON format | |
| Others | Other downloads |
-Validation report
| Summary document | 8eb2_validation.pdf.gz | 530.2 KB | Display | wwPDB validaton report |
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| Full document | 8eb2_full_validation.pdf.gz | 581.3 KB | Display | |
| Data in XML | 8eb2_validation.xml.gz | 82.3 KB | Display | |
| Data in CIF | 8eb2_validation.cif.gz | 111.9 KB | Display | |
| Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/eb/8eb2 ftp://data.pdbj.org/pub/pdb/validation_reports/eb/8eb2 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 1s9xS ![]() 3hc0S S: Starting model for refinement |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Assembly
| Deposited unit | ![]()
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| Noncrystallographic symmetry (NCS) | NCS domain:
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Homo sapiens (human)
X-RAY DIFFRACTION
Citation

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