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Open data
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Basic information
Entry | Database: PDB / ID: 8cmw | ||||||
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Title | A225L variant of the CODH/ACS complex of C. hydrogenoformans | ||||||
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![]() | OXIDOREDUCTASE / CODH / ACS | ||||||
Function / homology | ![]() CO-methylating acetyl-CoA synthase / CO-methylating acetyl-CoA synthase activity / : / acetyl-CoA metabolic process / 4 iron, 4 sulfur cluster binding / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() ![]() synthetic construct (others) | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Ruickoldt, J. / Jeoung, J. / Lennartz, F. / Dobbek, H. | ||||||
Funding support | ![]()
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![]() | ![]() Title: A225L variant of the CODH/ACS complex of C. hydrogenoformans Authors: Ruickoldt, J. / Jeoung, J. / Lennartz, F. / Dobbek, H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 561 KB | Display | ![]() |
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PDB format | ![]() | 457.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 3 MB | Display | ![]() |
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Full document | ![]() | 3 MB | Display | |
Data in XML | ![]() | 49.7 KB | Display | |
Data in CIF | ![]() | 69.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components on special symmetry positions |
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Components
-Protein , 2 types, 2 molecules AB
#1: Protein | Mass: 73172.102 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Production host: ![]() ![]() |
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#2: Protein | Mass: 82153.250 Da / Num. of mol.: 1 / Mutation: A225L Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Gene: acsB, CHY_1222 / Production host: ![]() ![]() References: UniProt: Q3ACS4, CO-methylating acetyl-CoA synthase |
-Protein/peptide , 1 types, 1 molecules D
#3: Protein/peptide | Mass: 123.171 Da / Num. of mol.: 1 / Source method: obtained synthetically / Source: (synth.) synthetic construct (others) |
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-Non-polymers , 9 types, 148 molecules ![](data/chem/img/RQM.gif)
![](data/chem/img/FES.gif)
![](data/chem/img/SF4.gif)
![](data/chem/img/OH.gif)
![](data/chem/img/ACT.gif)
![](data/chem/img/MPD.gif)
![](data/chem/img/NA.gif)
![](data/chem/img/NI.gif)
![](data/chem/img/HOH.gif)
![](data/chem/img/FES.gif)
![](data/chem/img/SF4.gif)
![](data/chem/img/OH.gif)
![](data/chem/img/ACT.gif)
![](data/chem/img/MPD.gif)
![](data/chem/img/NA.gif)
![](data/chem/img/NI.gif)
![](data/chem/img/HOH.gif)
#4: Chemical | ChemComp-RQM / | ||||||||||||
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#5: Chemical | ChemComp-FES / | ||||||||||||
#6: Chemical | #7: Chemical | ChemComp-OH / | #8: Chemical | ChemComp-ACT / | #9: Chemical | ChemComp-MPD / ( | #10: Chemical | ChemComp-NA / | #11: Chemical | #12: Water | ChemComp-HOH / | |
-Details
Has ligand of interest | Y |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.71 Å3/Da / Density % sol: 54.63 % |
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Crystal grow | Temperature: 291.15 K / Method: vapor diffusion, sitting drop / pH: 5 Details: To form the drops 0.7 uL of the reservoir solution (0.1 M Na-acetate pH 5, 80 g/L PEG 4000, 130 g/L MPD) were mixed with 0.7 uL of 19.6 g/L CODH/ACS solution in 50 mM Mops pH 7.6, 150 mM ...Details: To form the drops 0.7 uL of the reservoir solution (0.1 M Na-acetate pH 5, 80 g/L PEG 4000, 130 g/L MPD) were mixed with 0.7 uL of 19.6 g/L CODH/ACS solution in 50 mM Mops pH 7.6, 150 mM NaCl, 1.6 mM Ti(III)-EDTA |
-Data collection
Diffraction | Mean temperature: 100 K / Serial crystal experiment: N |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: DECTRIS PILATUS3 6M / Detector: PIXEL / Date: Mar 25, 2021 |
Radiation | Monochromator: DCM Si(111) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9184 Å / Relative weight: 1 |
Reflection | Resolution: 2.47→46.86 Å / Num. obs: 62368 / % possible obs: 99.81 % / Redundancy: 10.03 % / CC1/2: 0.985 / Rpim(I) all: 0.146 / Net I/σ(I): 5 |
Reflection shell | Resolution: 2.47→2.56 Å / Redundancy: 10.46 % / Mean I/σ(I) obs: 0.4 / Num. unique obs: 6088 / CC1/2: 0.218 / % possible all: 99.71 |
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Processing
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Refinement | Method to determine structure: ![]()
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Refinement step | Cycle: LAST / Resolution: 2.6→22.936 Å
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Refinement TLS params. | Method: refined / Refine-ID: X-RAY DIFFRACTION
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Refinement TLS group | Refine-ID: X-RAY DIFFRACTION
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