+Open data
-Basic information
Entry | Database: PDB / ID: 8bdc | ||||||
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Title | Human apo TRPM8 in a closed state (composite map) | ||||||
Components | Transient receptor potential cation channel subfamily M member 8 | ||||||
Keywords | MEMBRANE PROTEIN / calcium ion channel / cold temperature sensor | ||||||
Function / homology | Function and homology information ligand-gated calcium channel activity / thermoception / TRP channels / response to cold / calcium ion transmembrane transport / calcium channel activity / intracellular calcium ion homeostasis / positive regulation of cold-induced thermogenesis / membrane raft / external side of plasma membrane ...ligand-gated calcium channel activity / thermoception / TRP channels / response to cold / calcium ion transmembrane transport / calcium channel activity / intracellular calcium ion homeostasis / positive regulation of cold-induced thermogenesis / membrane raft / external side of plasma membrane / endoplasmic reticulum membrane / identical protein binding / plasma membrane Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | ELECTRON MICROSCOPY / single particle reconstruction / cryo EM / Resolution: 2.65 Å | ||||||
Authors | Palchevskyi, S. / Czarnocki-Cieciura, M. / Vistoli, G. / Gervasoni, S. / Nowak, E. / Beccari, A.R. / Nowotny, M. / Talarico, C. | ||||||
Funding support | Poland, 1items
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Citation | Journal: Commun Biol / Year: 2023 Title: Structure of human TRPM8 channel. Authors: Sergii Palchevskyi / Mariusz Czarnocki-Cieciura / Giulio Vistoli / Silvia Gervasoni / Elżbieta Nowak / Andrea R Beccari / Marcin Nowotny / Carmine Talarico / Abstract: TRPM8 is a non-selective cation channel permeable to both monovalent and divalent cations that is activated by multiple factors, such as temperature, voltage, pressure, and changes in osmolality. It ...TRPM8 is a non-selective cation channel permeable to both monovalent and divalent cations that is activated by multiple factors, such as temperature, voltage, pressure, and changes in osmolality. It is a therapeutic target for anticancer drug development, and its modulators can be utilized for several pathological conditions. Here, we present a cryo-electron microscopy structure of a human TRPM8 channel in the closed state that was solved at 2.7 Å resolution. Our structure comprises the most complete model of the N-terminal pre-melastatin homology region. We also visualized several lipids that are bound by the protein and modeled how the human channel interacts with icilin. Analyses of pore helices in available TRPM structures showed that all these structures can be grouped into different closed, desensitized and open state conformations based on the register of the pore helix S6 which positions particular amino acid residues at the channel constriction. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 8bdc.cif.gz | 938.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb8bdc.ent.gz | 604.9 KB | Display | PDB format |
PDBx/mmJSON format | 8bdc.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/bd/8bdc ftp://data.pdbj.org/pub/pdb/validation_reports/bd/8bdc | HTTPS FTP |
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-Related structure data
Related structure data | 15981MC C: citing same article (ref.) M: map data used to model this data |
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Similar structure data | Similarity search - Function & homologyF&H Search |
-Links
-Assembly
Deposited unit |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Ens-ID: ens_1
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